BAC Information

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BAC

Clone NameMSMg01-214E03
Chromosome5 (Build37)
Map Location 23,262,792 - 23,263,114
singlet/doubletsinglet
Overlap genePus7
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream geneRint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214E03.T7 (MSMg01no214_e03.b1)MSMg01-214E03.TJ (MSMg01no214_e03.g1)
ACCAG394968AG394969
length738819
length of high quality
(start - end)		326 (46 - 371)---
definitionCHROMAT_FILE: MSMg01no214_e03.b1 PHD_FILE: MSMg01no214_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:31 2005CHROMAT_FILE: MSMg01no214_e03.g1 PHD_FILE: MSMg01no214_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGCAATACCGCCCTACTACTCCCTGAAGACACTCAGTGAACC
ACACCTCCAGAGCTTCCATGTTTCTCCGCTCACAGACATGGATAATGCAG
AAATGTGCATGCATGTGCGCGCACACACACACATACATATATACACACAC
ACACACACTCTCATATGTACATATGTACTAGGCACCAGCCTGTTTGTTTC
CTTGCTTGCTATGTAAGGAAGCTCCTTAGTGCTCCATCTCCCTTTCTCAC
TTTTGTTCACTGTCAGGTATTCAGCCTTACTAAGTTACAAAAAAAAAAAA
AAAAAAAGTTGCTGCACTAATAGAAAACGTACGAAGATGGCCATCCAAGT
CAGGAAATGGGTGAAACTGGAACACCCAGTTCCCCTCTGCCCCGTGAAGC
AGTCGGGCCTCACACAAACCAGGGCGAGCTTGAGCAGGTGTGTTCCAGGC
CCTTGAATCAAGATGTGCAGGGAGGATGCTCAAAGTCGACAAGGACCTAC
AAAAGCAGGGGGTCAGCACAAACAGATTGCGGACCAACTGATGGAGCTCT
GTAGTCAGCAGACACTGCTGGAGAAAGGACGGGGTTTCAGAGCAGAAACC
GAAAAAAAAAAAAACAAATAAAATAAAACTAAGCAAAAGCAAAAGATAGG
GCCAAAAGAAACAAGTTATCAGCCTGGCTGCCCGTGAC

TCCTTAGCTTTTTTATATAGCCCCTCCCGCATGCCAGAGGTTATGGGTGT
NNNTACTTTACTAGAGATCATCATCTCNNNNTNTNNNNTNNNNNNNNCCT
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTTGGNAGTTTGGGCCGAAGGTA
AGCCCCCCAAGGTCCTTAACTCAAAGGTCTTAAAGGCTTGGGTGGGGGTT
CCATCAAAGGGGGCTAAAGGGAAAAATGTTTTCCCTTAAAGAAAAATTTT
TTAGGGCCCCCCAACTTTAAAGAAAGAGGCCCGGGGGGCCCCCCTAATTT
TGGGGGAGAACCCCCCCCCCCCGGGTGTGGAAAAAAATATAAAAAAAAAT
TTTCTTCCCCCGCGCGGGGGGGGGGGAAAAAACAAAAGGGTGCTTTTTAA
ATATGTTTTTCCTTTCTCCCCCCCCCCCCCCCCTGTGGAAGATTTTTCTT
CCCGCCCCCCACTTTTTTTATAACACACCCCCCCCCTACTCTTTTTAAAA
AAAAAAAACNCCCCCNNACGTCTCCCCCCCCACCCACAACCCAAANGCCG
TAGGTGTTTTTTTTTTTTTGCCCCCCCCCCCCCCCCCCCCCCCCCCAAAA
AATAAAATATTTTTTTCTTCTCCGCCACCCCCCCCCCGAATACCCGTTGT
TCCTCCTCCGCTTGTAATAAACTAAAAACAAAAAAATTATTTTCTTTTCC
TCTCTGTTCTTGGTGGTGTGTCTCCTNTTCCCCATTATATACTAACACTC
TCTCCCTTATTCCTCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_e03.b1 MSMg01no214_e03.b1 CHROMAT_FILE:
MSMg01no214_e03.b1 PHD_FILE: MSMg01no214_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:31 2005
         (326 letters)



>mm_chr5_23262589_23263314
          Length = 726

 Score =  578 bits (299), Expect = e-169
 Identities = 317/323 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttagcaataccgccctactactccctgaagacactcagtgaaccacacctcc 63
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttagcaaaattgccctactactccctgaagacactcagtgaaccacacctcc 263

                                                                       
Query: 64  agagcttccatgtttctccgctcacagacatggataatgcagaaatgtgcatgcatgtgc 123
           |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agagcttccatggttctgtgctcacagacatggataatgcagaaatgtgcatgcatgtgc 323

                                                                       
Query: 124 gcgcacacacacacatacatatatacacacacacacacactctcatatgtacatatgtac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcgcacacacacacatacatatatacacacacacacacactctcatatgtacatatgtac 383

                                                                       
Query: 184 taggcaccagcctgtttgtttccttgcttgctatgtaaggaagctccttagtgctccatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taggcaccagcctgtttgtttccttgcttgctatgtaaggaagctccttagtgctccatc 443

                                                                       
Query: 244 tccctttctcacttttgttcactgtcaggtattcagccttactaagttacaaaaaaaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccctttctcacttttgttcactgtcaggtattcagccttactaagttacaaaaaaaaaa 503

                                  
Query: 304 aaaaaaaaagttgctgcactaat 326
           |||||||||||||||||||||||
Sbjct: 504 aaaaaaaaagttgctgcactaat 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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