Query= MSMg01no214_h03.b1 MSMg01no214_h03.b1 CHROMAT_FILE:
MSMg01no214_h03.b1 PHD_FILE: MSMg01no214_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:46 2005
(564 letters)
>mm_chr5_58461616_58462578
Length = 963
Score = 998 bits (516), Expect = 0.0
Identities = 549/560 (98%), Gaps = 1/560 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgaggaacttgatttgtcaatacatgtgttataacttgaatttatttttctg 64
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcagtgaggaagttgatttgtcaatacatgtgttatagcttgaatttatttttctg 264
Query: 65 ttttctcctccccctctcttcccttcttccttctttcttttcatcactttgaagtcagcg 124
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttctcctccccgt-tcttcccttcttccttctttcttttcatcactttgaagtcagcg 323
Query: 125 ctgcttactgccatgccaccactgtactgtaccttatgttattttaaaaattgcttcatc 184
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 324 ctgcttactgccatgccaccactgtgctgtaccttatgttattttaaaaatcgcttcatc 383
Query: 185 tgccgtttctttaatttatgtccatatattccacaggcagagtttaagcatctttaaatc 244
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgctgcttctttaatttatgtccatatattccacaggcagagtttaagcatctttaaatc 443
Query: 245 tatagcaatgtgaaatactccagcaaactctgacagactttatggagacacaataccagg 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 tatagcaatgtgaaatactccagcaagctctgacagactttatggagacacaataccagg 503
Query: 305 tcttggggcaatggaaattatctcataggactatttatatctctacagtgtccttaaggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcttggggcaatggaaattatctcataggactatttatatctctacagtgtccttaaggt 563
Query: 365 caagtgatatgcatatgttatttgacatgtatcttatctgaatgaaacaagtcacgggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caagtgatatgcatatgttatttgacatgtatcttatctgaatgaaacaagtcacgggat 623
Query: 425 gtgtctgatgtaatctgaagtttcatagctgtgtcatgcttgtctgtgttgtcaccattt 484
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 624 gtgtctgatgtaatctgaagtttcatagctgtgtcacgtttgtctgtgttgtcaccattt 683
Query: 485 ctgagggtttagctttgaggcacactgatcagcaagtttatgtttcaaactcccttagca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgagggtttagctttgaggcacactgatcagcaagtttatgtttcaaactcccttagca 743
Query: 545 catatcatttttcactggct 564
||||||||||||||||||||
Sbjct: 744 catatcatttttcactggct 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_h03.g1 MSMg01no214_h03.g1 CHROMAT_FILE:
MSMg01no214_h03.g1 PHD_FILE: MSMg01no214_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:46 2005
(600 letters)
>mm_chr5_58527614_58528613
Length = 1000
Score = 1129 bits (584), Expect = 0.0
Identities = 596/600 (99%)
Strand = Plus / Minus
Query: 1 ttagaaatactgatacggtcctatctatttatttctcatttgattaaccctaaagagttg 60
|||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 997 ttagaaatactgatacagtcctatctatttatttctcatttgactaagtctaaagagttg 938
Query: 61 taatgcactttaaataaattgacaaaataaaatattttatttttctctccctttaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 taatgcactttaaataaattgacaaaataaaatattttatttttctctccctttaaattt 878
Query: 121 attttctaagacagttgtttctttagtggactgtttttaaaattagaaatattaattaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 attttctaagacagttgtttctttagtggactgtttttaaaattagaaatattaattaac 818
Query: 181 acttttatttttaaaatcccaatctactcttcatgattatatagctagcattactctgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 acttttatttttaaaatcccaatctactcttcatgattatatagctagcattactctgtg 758
Query: 241 gacctttatcttttttatgaccttttcttaattaatcattttagttataacttttaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gacctttatcttttttatgaccttttcttaattaatcattttagttataacttttaatgg 698
Query: 301 aaaaatagcactgaacatcacaagtgagatataatattcactcatcatcatctgaaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaaaatagcactgaacatcacaagtgagatataatattcactcatcatcatctgaaacta 638
Query: 361 tgtggggcaaatttttgcgtttattaactattaaccagtgtttatcttcccttgggacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgtggggcaaatttttgcgtttattaactattaaccagtgtttatcttcccttgggacat 578
Query: 421 tcaagaaggagacaaagttattcctgtatgaatcgtgcatatgaaatccaacccaggaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcaagaaggagacaaagttattcctgtatgaatcgtgcatatgaaatccaacccaggaat 518
Query: 481 aagatttccatttagcaaatgaacacaacaggaaacaacaaagttggtttgcaaaggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aagatttccatttagcaaatgaacacaacaggaaacaacaaagttggtttgcaaaggaaa 458
Query: 541 tacagatatttctagctttgaatgttttagcattcctatattttccttatttcctgcagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tacagatatttctagctttgaatgttttagcattcctatattttccttatttcctgcagt 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
