BAC Information

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BAC

Clone NameMSMg01-214L12
Chromosome5 (Build37)
Map Location 142,507,418 - 142,507,526
singlet/doubletsinglet
Overlap geneSdk1
Upstream geneLOC623466
Downstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214L12.T7 (MSMg01no214_l12.b1)MSMg01-214L12.TJ (MSMg01no214_l12.g1)
ACCAG395246AG395247
length752818
length of high quality
(start - end)
267 (36 - 302)109 (125 - 233)
definitionCHROMAT_FILE: MSMg01no214_l12.b1 PHD_FILE: MSMg01no214_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:08 2005CHROMAT_FILE: MSMg01no214_l12.g1 PHD_FILE: MSMg01no214_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATT
CCCTGGGACCCGTTGTCTCAGTCTGATATCCAAAGGGTAGCTGGGGCACA
AATGTCTTCCTAGATCAGTGGTTCTCAACCTTCCTAATGCTGCAAGCCTT
TAATACAGAACTTCATGTCCTGGTTACCTCCAAACATAAAATTATTTTTG
TTTCTACTTCACGACTGTAAATGTCATAAATCACAATGTAAATATCTACT
GTGCAGGATATCTGATATGTGACCCCCAAAGGGGTCACGACCCACAGGAT
AATATTTTCTGCTTTAGACGCTCTTCACTCCTGCCAGGAGATTTTTTTTT
TCCCCCCCCACCCCCACGTAGGTGACCTAGTTCCTTGTATTCTCGTGCCC
CCCCCCCATAAAAAATAAACTCTTCCCAAAATCGAGACTGTTTCCCCTCG
CCACCCTTCATCTTTCCTCAAATCTGTCTCTTCCTCTTATCACATTCTGT
CTACCCTATTATTTTACTTTTACCTCCTCTTTTATTTTTCCCCATTCCTC
CTTTCATACTTTTTCCTAAACTTTTTACCCCCCTTCCTTCCTCCCTTTTT
TTTTTTTCTACCCCTTTTTTTCCCCCTTGCTCACCCCCCTTTTTTTTCCC
CCTCCCCTTTTTTTTTCTTTTACATTTCCTCTCCCCCCTTTTTTTCCTCC
ACTCCATTTTCCTTTTTTTCTATCTCTCCCTTCTTTTTTCCCTCCCCCCT
CC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCTCTGCCTGCACGTTCTGG
GGAGGTGCAGTGGGTTTCTGTCCCCATATGGAGGTGGAAGGCAGCAGCAC
AAATGCCAGGAGGCCCCATGGGGAGAAGAGACAAAAGAGAAACCTCAGTC
ACCATTCAGGACTCAAGAGTAATCACAGAGCAGACGGAAGGCAGGTGAGT
ATCACCCAAACTACTCTCCGTGTGACAATGATCGAGAACTGGTCCATTTC
CGTGGCGCACCCCGCTTTTTTTTCTTTCACCCCAGAGCAGGCCCAGACCA
CGACTTTTAGGTGAGTTCCCCAAACGGACCCCCACATAAAATGGAAAAAG
AGGTGGGGGGGGGGGTTTCCCCCCAAANNAACCTAAAAACTTTTTTCCCG
CTCGGGGGTTTTCTTATCCTATTCTTTCACTTTATCCTTTCTCACTTCTT
CCCACCCTCCTCTTTTCTTTTATTTCCTCTCCCTCTCTCCTACTTTTTTT
CTTCACCTTTTTCTTCCCCCCCTCTCTCTTTTTCTCCTCTTTTCCCATTC
CGTTTCTTTTCTCCTGTCCTCCTCCTTCCATTCTCCTTTCCCTACTTATT
CACTGCCCTTTAATTTCTTCTCCCTCTACTTTATCCTGCCTTCTTTTTTC
TATTCGTTTATCTCTATCCTCCTTTTCCTTTTTTCCTCCACACCTCACTC
TATTATTTCTCTCCCCCACCTTCTCATATTTTCCACCATTCTTCACATTC
TTTTCTCTTTTTTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_l12.g1 MSMg01no214_l12.g1 CHROMAT_FILE:
MSMg01no214_l12.g1 PHD_FILE: MSMg01no214_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:08 2005
         (109 letters)



>mm_chr5_142507218_142507726
          Length = 509

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatggaggtggaaggcagcagcacaaatgccaggaggccccatggggagaagagacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catatggaggtggaaggcagcagcacaaatgccaggaggccccatggggagaagagacaa 250

                                                            
Query: 61  aagagaaacctcagtcaccattcaggactcaagagtaatcacagagcag 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagagaaacctcagtcaccattcaggactcaagagtaatcacagagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)