TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAATTATTACTTTTAAGGTGAGTGGGTGGCACTATCCCTCAACT
GGGGGCCATGCCTGTCCCCTGCCATATGGTCTCTGCAGGTTTTATTTTCT
CCTTGTTGGGTATTTTGGCTAAAGCCCTTCCTATTGGGTCCTAGGACACT
CTTGGGTCCCTAGCGTATGGGACATTCTAGTGGCTACTACCAGTTCTCCC
TTCCCCCCACTGCTATACACCTTCTTTCCAAATTCTGGACCCTCTATACC
CACTGATCTCCTCCCATATCTGAACTGGCTCCCCTTTTTCCCTCCCCCTT
CACGTCTAATAAAATTCTAGTGACTTTCTGGAGAGTATTTTCAGGTACAA
AATGAAATATTAGTGCTAAAACAGAAAAATAGAGTAGGATAGATATCCAT
GAGGGTGAAGTGTTTTAGAATGTTGTGTGTGCCAGTGTCAGAGACAACTT
AAATGTCTAAGTTTTTGTGAAATGACTTAGATAAAAAAGCTCCAGAGAAA
TGCTTTCAAAAATCACTCTGTTGGCCTACAAAAGCAGGAACTTTGATATG
CCTACTGAAGATCATGATGCTACATTTTTGGTATGCAATTACAAATTTTG
GTAAAATTGCAGAGCCTAATATTTCTTCCTAGTTCCTGACTGCAATCATT
TATTTAGAGTTTTGTACCCATTTATGGG

CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAATGGT
GGTAATGAAGTGTTCCACGTAAACCAGACTGTTGAGAAGGATTCAACTGC
ATGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCT
TTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCT
ATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGTCTGGCCTTGAAC
TTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCT
TTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCT
ATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAAC
TTTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGTG
GTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGA
AGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAACATGGCACACAAA
ATAAGTATACAGGCCTTTCCAAGAGTCTTGAACCTGAGGAAAAGTTTAGG
TCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGA
TCAATTAGCGGAGGTCTCTAGGAGAAGGAGA

Query= MSMg01no214_n03.b1 MSMg01no214_n03.b1 CHROMAT_FILE:
MSMg01no214_n03.b1 PHD_FILE: MSMg01no214_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:15 2005
         (683 letters)



>mm_chr5_55960465_55961547
          Length = 1083

 Score = 1073 bits (555), Expect = 0.0
 Identities = 571/577 (98%), Gaps = 2/577 (0%)
 Strand = Plus / Minus

                                                                        
Query: 109  tgttgggtattttggctaaagcccttcctattgggtcctagg--acactcttgggtccct 166
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 1083 tgttgggtattttggctaaagcccttcctattgggtcctaggacacactcttgggtccct 1024

                                                                        
Query: 167  agcgtatgggacattctagtggctactaccagttctcccttccccccactgctatacacc 226
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1023 agcgtatgggacattctagtggctactaccagttctccctcccccccactgctatacacc 964

                                                                        
Query: 227  ttctttccaaattctggaccctctatacccactgatctcctcccatatctgaactggctc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  ttctttccaaattctggaccctctatacccactgatctcctcccatatctgaactggctc 904

                                                                        
Query: 287  ccctttttccctcccccttcacgtctaataaaattctagtgactttctggagagtatttt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  ccctttttccctcccccttcacgtctaataaaattctagtgactttctggagagtatttt 844

                                                                        
Query: 347  caggtacaaaatgaaatattagtgctaaaacagaaaaatagagtaggatagatatccatg 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  caggtacaaaatgaaatattagtgctaaaacagaaaaatagagtaggatagatatccatg 784

                                                                        
Query: 407  agggtgaagtgttttagaatgttgtgtgtgccagtgtcagagacaacttaaatgtctaag 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  agggtgaagtgttttagaatgttgtgtgtgccagtgtcagagacaacttaaatgtctaag 724

                                                                        
Query: 467  tttttgtgaaatgacttagataaaaaagctccagagaaatgctttcaaaaatcactctgt 526
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 723  tttttgtgaaatgacttagataaaaaagctccagagaaatgctttcaaaagtcactctgt 664

                                                                        
Query: 527  tggcctacaaaagcaggaactttgatatgcctactgaagatcatgatgctacatttttgg 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  tggcctacaaaagcaggaactttgatatgcctactgaagatcatgatgctacatttttgg 604

                                                                        
Query: 587  tatgcaattacaaattttggtaaaattgcagagcctaatatttcttcctagttcctgact 646
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  tatgcaattacaagttttggtaaaattgcagagcctaatatttcttcctagttcctgact 544

                                                 
Query: 647  gcaatcatttatttagagttttgtacccatttatggg 683
            |||||||||||||||||||||||||||||||| ||||
Sbjct: 543  gcaatcatttatttagagttttgtacccatttttggg 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)