BAC Information

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BAC

Clone NameMSMg01-215G19
Chromosome5 (Build37)
Map Location 69,429,647 - 69,429,886
singlet/doubletsinglet
Overlap geneLOC666996
Upstream geneAY616753
Downstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215G19.T7 (MSMg01no215_g19.b1)MSMg01-215G19.TJ (MSMg01no215_g19.g1)
ACCAG395678AG395679
length701706
length of high quality
(start - end)
240 (432 - 671)326 (381 - 706)
definitionCHROMAT_FILE: MSMg01no215_g19.b1 PHD_FILE: MSMg01no215_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:05 2005CHROMAT_FILE: MSMg01no215_g19.g1 PHD_FILE: MSMg01no215_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGCACTGACATCTTCCATTTACTTATGAGAAAAAAAAAAAAAAAAA
CACTTAGATGGGCCTTCATCGAATACTTGGGAAAACACTGATAGTTTTTT
TCTGTTTATTATAAGCAAAATAAAAATAGGATCAGGTAGTCATATGTACA
ACAAATACACAATATAATCAATCCATGGCTCCATGGAGCTAATAACAGGT
AGCTCAGCCATAAACAAATTAAACTTTCTTAATGTATGCCAGCTGAATGT
TACGCACATTTAGGATTTAGTGGTTTAAAATTTAAAATTTATCCTGGCGA
TCTATGNATTCATTACCCCCCCCCCCCCTTCTATTTTCTTCTAGTGTTTG
TTTCTTCTATTTCCCCGACAAATAAAAATAGGATTTTTGCATGAGTAAAA
CGTAAATAATTAAATAAATAAGATACCATTTCCTAGGCTATCAACCATAT
GTACATATACATTATATGTTTGCAAATACATGTATTGAGGAATCCAAACA
TGTTCTCATTTGATTTGGAGGTTATTACAAAACAATCATGGGTGACTAAG
AATAAGGAAACAGAAAATCCTAAACAGTGAGCTATATAATGTTCTTTGAA
TATTTTATTTTATGCTGTTTAATTGGGTAAGCTAAGACAAGAATCATGAC
N
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGCTCTGTACCCCCATT
TTAATTGGGTTATTCGGGTTTCTTTGGAGTCTAACCTTTTAGGTTCTTCA
TATATTTTGTATATTAGCCATCTATCAGATGTAGGATTAGTAAAGATCTT
TTGCCAAACTGTAGGTTACTGTTCTGTCCTATTGGAAGAAGGAAGAAGGG
ACCTGAGTAGAAGAGGGAAGAGTGAGTAGAAAAGCAGGCAAGATCAGGTA
TGAGGGGAAGACAGGAGAGGAGCCCAAAGGATCAGGGGAATAAATGGAAA
TATGCAGCTTCTTTTGTTGGGGGCTAGAGTAACCTCTAGAATGTCCCAGA
GATCTGGGATATGATAGGCCTCCAGGACTCAATGGAGATGACCTTAGACA
TAGAGCCCAACAGTCAGGGGATGGAACCTGAAAATACCACCTCCAGTACA
TACACAGAGCCCACAGTGGAGGGACAGAGCCACCCACATACCTTCAAACA
TTTTGACCCAGAGTTGTTCTTGTCTAAAAGAAATTAAGTGACAAAAATGG
AGCAGAGGTTGAAGGAAAGAACTCCAGTGACCAGCCCAACTTGGGATCCA
TGCCATGTGCAGGCACCAAACTCTGGCATTATTAAAAACGCCATGTTGTG
CTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_g19.b1 MSMg01no215_g19.b1 CHROMAT_FILE:
MSMg01no215_g19.b1 PHD_FILE: MSMg01no215_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:05 2005
         (240 letters)



>mm_chr5_69429447_69430086
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttttgcatgagtaaaacgtaaataattaaataaataagataccatttcctaggctat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattgttgcatgagtaaaacgtaaataattaaataaataagataccatttcctaggctat 260

                                                                       
Query: 61  caaccatatgtacatatacattatatgtttgcaaatacatgtattgaggaatccaaacat 120
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccatatgcacatatgcattatatgtttgcaaatacatgtattgaggaatccaaacat 320

                                                                       
Query: 121 gttctcatttgatttggaggttattacaaaacaatcatgggtgactaagaataaggaaac 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gttctcatttgatttggaggttattacaaaacaatcatgggtgactcagaataaggaaac 380

                                                                       
Query: 181 agaaaatcctaaacagtgagctatataatgttctttgaatattttattttatgctgttta 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaatcctaaacagtgagttatataatgttctttgaatattttattttatgctgttta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)