BAC Information

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BAC

Clone NameMSMg01-215M21
Chromosome5 (Build37)
Map Location 123,335,286 - 123,335,558
singlet/doubletsinglet
Overlap geneFbxl10
Upstream geneCutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34
Downstream geneLOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215M21.T7 (MSMg01no215_m21.b1)MSMg01-215M21.TJ (MSMg01no215_m21.g1)
ACCAG395922AG395923
length704704
length of high quality
(start - end)
273 (432 - 704)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no215_m21.b1 PHD_FILE: MSMg01no215_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:34 2005CHROMAT_FILE: MSMg01no215_m21.g1 PHD_FILE: MSMg01no215_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCTAGCCTGATCTAGTTCCAGGACTAGGGCTAGAAACACACACAT
ACACACACACACACACACACACACACACACACACACACACACAATGACAA
CAACACAACAACAAAAACCCCCAACTAACCAAAACACAGTAAGTACATAA
AATAAAAATAAAAGAAGCTACCACCTGTGGGATTCTGATGACTCCAAAGG
ACCCAGGCTTACCTACAGAAGCTCTTAGCCTGTTCCCCCTTGCTCAACAA
TCTGTGGGAGGCTGGTATTTTTCCTCAGCTTCCATCCAAATCAACATGTC
TAACTTGNGTTANATANAANACCAATCCCAACGCAAGTCCTACTGAGCCA
GATACAAGAGAGTCACACAACCAAAAAATAAGGCCATTCTTCCCCCTTGC
TAGTTAGTTTTGTTTTTGAAAACAGACTTGGCTCTCATAAAAGCATTTGT
GAACATATTTACTTTCAAAATAAACCTAAACCATTTTTTAATTTCTCAAC
TGTAATCTCAAATACAGCATTAGATAAATAAGACTTTTCTTAAGACCACA
TTATTTGAAAATTGCTATAAATGATATGCAGTAAGGCCAGGGGCCAAGTT
ATATTTTTGGCCTTCCTCCAATTAGTGCCTACCACACAGGGGAAGTACCA
TCAG
CGATGATGTGGGAGGCCTGGCGGCCGCCTGGTACAAAAATTGGGGTGAAC
TATAGAAGTATCAACAAAATTCACTATGTAGTCCAGGCTGGCCTCAAACT
CACAGAGATCCTGCCTCTCCCCTCAGAGTGTTGGGGTTAAAAGTGTGTGC
CAAGCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACCTGGGAAGCA
GAAGCAGGTTGATTTCTGAGTTCTAGGTCTACAGAGTGAGTTCCAGGACA
GCCAGGGCTACACAGAGAACCTCTGTCTCAGGGGGGGGAAAAAAGTGTGC
GCCAACATCACCCATCTATTCTCTCTATCTCTTTTTGTAATGCTAAAGAT
CCATCTGATAGCCTTGGCCTCAGCTTTTGTGTGCTTTTGACAGGTCCCCA
CTAAGACCAGAGTCTTGCGGGCTCTGGATTCCCACACATTCTTGGTTCAA
GTCCCATAGCCATAACATCCTTGTGGCTTGTAACTTCTGATCCCGAACTT
CCTAAATGCTGAGATTAAAGTATGCTACCATGCCTGGCTTAAGCTTTCTT
ATATGGTTCTTGACTCTATCCATAGGATATTTACCACCCTTTGTAGGTGT
ATTGGCAAGATCTCGGCAGGTGAACCAAGCCTTTCCAAGTGGCATCCCAC
TAGGCTCCCATACTGGGCTGTCACACTTCTGGTAGGCACTGTGAGCATAT
GCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_m21.b1 MSMg01no215_m21.b1 CHROMAT_FILE:
MSMg01no215_m21.b1 PHD_FILE: MSMg01no215_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:34 2005
         (273 letters)



>mm_chr5_123335086_123335758
          Length = 673

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccattcttcccccttgctagttagttttgtttttgaaaacagacttggctctcataaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ggccattcttcccccttgctagttacttttgtttttgaaaacagacttggctctcataaa 260

                                                                       
Query: 61  agcatttgtgaacatatttactttcaaaataaacctaaaccattttttaatttctcaact 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agcatttgtgaacatatttactttcaaaataaacctaaaccatttttttatttctcaact 320

                                                                       
Query: 121 gtaatctcaaatacagcattagataaataagacttttcttaagaccacattatttgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatctcaaatacagcattagataaataagacttttcttaagaccacattatttgaaaa 380

                                                                       
Query: 181 ttgctataaatgatatgcagtaaggccaggggccaagttatatttttggccttcctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctataaatgatatgcagtaaggccaggggccaagttatatttttggccttcctccaa 440

                                            
Query: 241 ttagtgcctaccacacaggggaagtaccatcag 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtgcctaccacacaggggaagtaccatcag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)