BAC Information

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BAC

Clone NameMSMg01-218A10
Chromosome5 (Build37)
Map Location 39,998,817 - 39,999,134
singlet/doubletsinglet
Overlap genenone
Upstream gene6820424L24Rik, Clnk, LOC384174
Downstream geneHs3st1, EG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218A10.T7 (MSMg01no218_a10.b1)MSMg01-218A10.TJ (MSMg01no218_a10.g1)
ACCAG397347AG397348
length756713
length of high quality
(start - end)
318 (45 - 362)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no218_a10.b1 PHD_FILE: MSMg01no218_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:55 2005CHROMAT_FILE: MSMg01no218_a10.g1 PHD_FILE: MSMg01no218_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTGCCAGAGACTTTTAGGTGATGTTGGTCCTGAGCTTCAGTCT
GAGTTGTCTTTGACCTCTTTGCACTCACCCTTGCCACTGGGAAAGATCTC
TCTTCCTCTTTGAAATGGAGAGTAGCCAGGAGGCCAAGCGTGCTATCGAC
CACTCAGGAGAGATTTCTGGCAGCCAAGTGTGTTAGAGACTAACCTCAGG
AGAATTCTGGAGGCCTGATGTGGTAGACAGTACCCAGGGGATAATGATGG
AGGCCAATAATACTAGTGACCCCCCCAGGGGTGACCGGACTCTGGGAAAA
TGCTATCATTGTCTTTATTCTCCCCATGCTACCCCAGGTTAATGGTAACA
AAGGCCCATAGGTTACTGCGAAGACTAAAAAATAACTCACCTACTGTTTA
TGGAATTATGACTTCAAGATTGTTCAATTGTCCATTATCCTTGTATTGCT
TATAACAACTGTGGGAAAGGCATTATATTCCCTACTAGAAAGTCCTAGAA
ATTAAGATATTTGTCAAAGTTCACATAGCTATAAACAAGGCTGCACAGAA
ATATTCATTTTTGGATTCATGGGCAGAACCTAGAGAACAGAGGTCCAAGA
AGTATGAATCTCAATTGTCAGTTTGAAGACATAATGGTGTGCCTAGGACA
ACACTGGAATATTTGAGTATTCCAGAAGAGGCTGAAGAGTGTATGGGAGT
GGAAGA
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGCTTTCCAAAACCAAAGTCCC
AAAATCCACATTCTTCCAAACAAAAACATGGTCAGGCTTATCACAGCAAT
AACCCAGTCCCTGGTACCAACTTCTGTCTTAGTTGGGGTTTTACTGCTGT
GAACAGATACCATGACCAAGGCAAGTCTTATAAAAGACAACACATAACTG
CAGCTGACTTACAGGTTCAGAGGTCCAGTTCATTATCAAGACAGGTACAT
GGCAACATCCAGGTAGGCATGGTACCGGAAGAGCTGAGAGTTCTACATCT
TCATCTGAAGGCTGCTATTTTATCACTCCACCACACCCCACCTAGGACAA
GGGTATGGATGCCCATGCCCACAAGGCCACACCTAATCCAACAAGGCCAC
AGCTCCCCAAAATTCTCCTCCCTAGGCCAAGCATATGCAAACCTCTATGT
TCTTCTCTCTCTGTCTCTCTGTCTTTCTCTGTATTTCCCTCCTACATCTC
TCTCCCTCCCTCTGTCCCCCTCCCTCTGTCCCTTTTTCTCTTCCTCCCTT
CTTACCTCTGACTGTGCGTGTGCGCGTATGGGTTTATGAGTTCTAAAACC
CCCCTGCCCTAGGCATAAATAACCATTTAAAAATTGCTCTTCTCTGCCCC
TGGCTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_a10.b1 MSMg01no218_a10.b1 CHROMAT_FILE:
MSMg01no218_a10.b1 PHD_FILE: MSMg01no218_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:55 2005
         (318 letters)



>mm_chr5_39998613_39999334
          Length = 722

 Score =  565 bits (292), Expect = e-165
 Identities = 310/318 (97%), Gaps = 4/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctgccagagacttttaggtgatgttggtcctgagcttcagtctgagttgtc 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctttctgccagagacttttaggtgatgttggtcctgagcttcaatctgagttgtc 264

                                                                       
Query: 65  tttgacctctttgcactcacccttgccactgggaaagatctctcttcctctttgaaatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgacctctttgcactcacccttgccactgggaaagatctctcttcctctttgaaatgg 324

                                                                       
Query: 125 agagtagccaggaggccaagcgtgctatcgaccactcaggagagatttctggcagccaag 184
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 agagtagccaggaggccaagtgtgctatcgaccacttaggagagatttctggcagccaag 384

                                                                       
Query: 185 tgtgttagagactaacctcaggagaattctggaggcctgatgtggtagacagtacccagg 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 tgtgttagagactaacctcaggagaattctggaggcctggtgtggtagacagtacccagg 444

                                                                       
Query: 245 ggataatgatggaggccaataatactagtgacccc----cccaggggtgaccggactctg 300
           |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 445 ggataatgatggaggccaataatactagtgacccctccccccaggggtgaccggactctg 504

                             
Query: 301 ggaaaatgctatcattgt 318
           ||||||||||||||||||
Sbjct: 505 ggaaaatgctatcattgt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 722
Length adjustment: 9
Effective length of query: 309
Effective length of database: 713
Effective search space:   220317
Effective search space used:   220317
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)