Query= MSMg01no218_d17.b1 MSMg01no218_d17.b1 CHROMAT_FILE:
MSMg01no218_d17.b1 PHD_FILE: MSMg01no218_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:11 2005
(318 letters)
>mm_chr5_19521699_19522416
Length = 718
Score = 563 bits (291), Expect = e-165
Identities = 309/315 (98%)
Strand = Plus / Plus
Query: 4 ggaattcttccctttccactgaagcattaggaaagacccattattaagcatttaaaattg 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccctttccactgaaacattaggaaagacccattattaagcatttaaaattg 263
Query: 64 tcagtaaacttagctcttaaagatcataaaagtttttatatttttttcttcaggacaaga 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 tcagtaaacttagctcttaaagatcataaaagcttttatatttttttcttcaggacaaga 323
Query: 124 gctaagcattacctggcgttttatgagctgttgtattggctttaaaatcacactgtaata 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 gctaagcattacctggcgttttatgagctgttgtattggctttaaaatcgcactgtaata 383
Query: 184 ttttctgtcaaggggaataaaatattcatgttcaggaacaactgagacaggatatagttt 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 ttttctgtcaaggggaataaaatattcaggttcaggaacaactgagacaggatatagttt 443
Query: 244 taaaaataatagacatgatcaaataggatgaatggtttcttgattagagacaagctatct 303
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 taaaaataatagacatgaacaaataggatgaatggtttcatgattagagacaagctatct 503
Query: 304 gttccttataatcaa 318
|||||||||||||||
Sbjct: 504 gttccttataatcaa 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_d17.g1 MSMg01no218_d17.g1 CHROMAT_FILE:
MSMg01no218_d17.g1 PHD_FILE: MSMg01no218_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:11 2005
(239 letters)
>mm_chr5_19671662_19672300
Length = 639
Score = 420 bits (217), Expect = e-122
Identities = 231/237 (97%), Gaps = 4/237 (1%)
Strand = Plus / Minus
Query: 1 tgaacattaaaagttagacttgagaacatttcacacaataccaactattttcaccttttg 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgaacattaaaagttagatttgagaacatttcacacaataccaactattttcaccttttg 376
Query: 61 ttttttaaagctaaaattttaagaccatccttaccctttgggatatataaaagtagagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttttttaaagctaaaattttaagaccatccttaccctttgggatatataaaagtagagga 316
Query: 121 agggaattagtctatctagtatatattgaaagactccggtctaattcaaactcaaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agggaattagtctatctagtatatattgaaagactccggtctaattcaaactcaaatttt 256
Query: 181 tc--gatatgtagatatttatacattgaatgtgttccggtgtgctcaggaaataatc 235
|| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 255 tcttg--atgtagatatttatatattgaatgtgttccggtgtgctcaggaaataatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
