BAC Information

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BAC

Clone NameMSMg01-218E20
Chromosome5 (Build37)
Map Location 20,631,321 - 20,631,612
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
Downstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218E20.T7 (MSMg01no218_e20.b1)MSMg01-218E20.TJ (MSMg01no218_e20.g1)
ACCAG397521AG397522
length752723
length of high quality
(start - end)
319 (45 - 363)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no218_e20.b1 PHD_FILE: MSMg01no218_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:16 2005CHROMAT_FILE: MSMg01no218_e20.g1 PHD_FILE: MSMg01no218_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATTTCATACATATTTCATCTGACTAAAAATATACCTGATTGCCA
TGTTCCAACTAATCTATTAAAATTCCCTTTTAACGTCTATAGTTTAATAG
TATCTTTAGCTTCCATTACAGCATCAGCAGTGGCACCACCACCACCACCA
TCATCACCACCACCACCACCATTAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAGAAGAGGGACAGAGCAAGAGATCAGAAACCC
AAATGAAAACATTACAGTTGATAATTTTAAGCCCTATGATACTCCCATTA
TTTTAAAAAATTTAGTTATTCCNTNACAANACCCTCTGCATCACCTATGG
CTTACAGGCTACACCCCCCTGTTACAAAAAAATCATTTATACCAGAGGCT
CTTTCTTGTTGCCACCTTCTGGGCTTTGTTCAGCTCTTCATAAACCAGGC
TGTCAGCTGTCTTAGCAGCCATAGCGCCTGCACGCCCTGTTGTTCTGCTG
TCTGTACACTGAAGCCACATTCCTGAGCACTTTCATCATCTACCTGTATT
ACCCTGGGAAACACGCCGCCCTTCGCTGTGCTCTGAGATTCCCAACAGAG
GGGTCGCTCTCTTCACACTCTTTGAGTTCTGGTAAGCATGAAGCTCTAAA
GGCATGGTGGTAGTCAGCTAAAAAATTCTTGGTATAAATGTTTCTTTAAC
CT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTTAATAGGGACGGGTTTTCGTTTTC
TCGCGCTCTTGCTTCTTACACTCTTGCTCCTGAAGATGTAAGCAATAAAG
TTTTGCCGCAGAAGATTTTGGTTTGTTGCGTCTTTCCTGGCCGGGCGTGA
GAACGCGTCTAATAACAATTGGTGCCGAATTCCGGGACGAGAAAAAACTC
GGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCG
CGGTAATAAAGGTTCCCGTATTGCAGACTGTTAAGAAGGATTCAACTGTA
TGAATTCTTAACTTTTCTGCCGGGGCANGACCCTACCAGTGAGTACAGCT
TTACGAGGTAAGTCTGCCCCCCAACAAAAAAAAAAATTCAAGACAGGCTA
TCAGAAGTAAAGTGGAATATGTTTGGCCTTGAATTTTTTCTGGTGTTAGG
AGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGATTAAGATAGGGCTGA
AAATTCTAGAGGAAATTCAGGACAAGCTATCAGAAGTAAAGCGGGGAGAG
AGAGTAGGAGCAAAGAGGATATATGGTACACAAAATAAGTATACAGGCCT
TTCCAAGGTTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCT
GGAGAGAGATTATAAGAAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_e20.b1 MSMg01no218_e20.b1 CHROMAT_FILE:
MSMg01no218_e20.b1 PHD_FILE: MSMg01no218_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:16 2005
         (319 letters)



>mm_chr5_20631276_20631992
          Length = 717

 Score =  476 bits (246), Expect = e-139
 Identities = 285/310 (91%), Gaps = 22/310 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatttcatacatatttcatctgactaaaaatatacctgattgccatgttccaa 64
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 337 gaattcctatttcatacatatttcatctgact--aaatatacctgattgccatgttccaa 280

                                                                       
Query: 65  ctaatctattaaaattcccttttaacgtctatagtttaatagtatctttagcttccatta 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 279 ctaatctattaaaatacccttttaacgtctatagtttaatagtatctttagctgccatta 220

                                                                       
Query: 125 cagcatcagcagtggcaccaccaccaccaccatcatcaccaccaccaccaccattaacaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 219 cagcatcagcagtggcaccaccaccaccaccatcatcaccaccaccaccaccatt----- 165

                                                                       
Query: 185 caacaacaacaacaacaacaacaacaacaacaacaacaacagaagagggacagagcaaga 244
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 -------aacaacaacaacaacaacaacaacaacaacaacagaagagggacagagcaaga 112

                                                                       
Query: 245 gatcagaaacccaaatgaaaacattacagttgataa----ttttaagccctatgatactc 300
           |||||||||||||||||||||||||| |||||||||        ||||||||||||||||
Sbjct: 111 gatcagaaacccaaatgaaaacattatagttgataagggg----aagccctatgatactc 56

                     
Query: 301 ccattatttt 310
           ||||||||||
Sbjct: 55  ccattatttt 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 717
Length adjustment: 9
Effective length of query: 310
Effective length of database: 708
Effective search space:   219480
Effective search space used:   219480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)