Query= MSMg01no218_j03.b1 MSMg01no218_j03.b1 CHROMAT_FILE:
MSMg01no218_j03.b1 PHD_FILE: MSMg01no218_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:37 2005
(310 letters)
>mm_chr5_128572641_128573350
Length = 710
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Plus
Query: 4 ggaattctctctctccataggcttattctgtatttgttagctacagcctttccacagaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctctccataggcttattctgtatttgttagctacagcctttccacagaat 263
Query: 64 tcaacctgtctaagaggctttcccccactttcccctctcctctctgctgcatttctgggc 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaacctgtctaagaggctttcctccactttcccctctcctctctgctgcatttctgggc 323
Query: 124 aagtcagaagcagtgtgatgttcacacctcatatttaatcatatctaagcattaattcct 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 aagtcagaagcagtgtgatgttcacacctcatctttaatcatatctaagcattaattcct 383
Query: 184 tctgcttggggaaagaaacagttgtcatatacaagaaagaataatacgtgaaaatccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgcttggggaaagaaacagttgtcatatacaagaaagaataatacgtgaaaatccaaa 443
Query: 244 atatctaatttcttatgtgacagtgatttcgggtgtcacttattgagctctcgataagtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatctaatttcttatgtgacagtgatttcgggtgtcacttattgagctctcgataagtg 503
Query: 304 gctgggt 310
|||||||
Sbjct: 504 gctgggt 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_j03.g1 MSMg01no218_j03.g1 CHROMAT_FILE:
MSMg01no218_j03.g1 PHD_FILE: MSMg01no218_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:37 2005
(253 letters)
>mm_chr5_128701741_128702392
Length = 652
Score = 433 bits (224), Expect = e-126
Identities = 241/250 (96%), Gaps = 7/250 (2%)
Strand = Plus / Minus
Query: 1 cttgtgggactttccacaagaggactgagctcagaacattccagattgaggcttggaatc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cttgtgggactttccacaataggactgagctcagaacattccagattgaggcttggaatc 387
Query: 61 ct---tggaattgagcatctgaggggatgaaaagttatggtgtgtgtaaaataactaatt 117
|| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctccctg----tgagcatctgaggggatgaaaagttatggtgtgtgtaaaataactaatt 331
Query: 118 gtgctgaaggtaataaatcccccctttaaatgctgcacctactgtatgggctgtttattg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgctgaaggtaataaatcccccctttaaatgctgcacctactgtatgggctgtttattg 271
Query: 178 aagtggctcgtgtctggctggtgttcgtcaggaaccctgcattcactgtagtagaggcag 237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagtggctcgtgcctggctggtgttcgtcaggaaccctgcattcactgtagtagaggcag 211
Query: 238 taattgcttg 247
||||||||||
Sbjct: 210 taattgcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 652
Length adjustment: 9
Effective length of query: 244
Effective length of database: 643
Effective search space: 156892
Effective search space used: 156892
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
