BAC Information

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BAC

Clone NameMSMg01-218M08
Chromosome5 (Build37)
Map Location 78,942,537 - 78,942,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669227, LOC100039398, Mthfr-ps1
Downstream geneEG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218M08.T7 (MSMg01no218_m08.b1)MSMg01-218M08.TJ (MSMg01no218_m08.g1)
ACCAG397819AG397820
length829734
length of high quality
(start - end)
276 (45 - 320)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no218_m08.b1 PHD_FILE: MSMg01no218_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:53 2005CHROMAT_FILE: MSMg01no218_m08.g1 PHD_FILE: MSMg01no218_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGTTTAGTTCTATACCCATTTTTTGATTAGGTTGTTTGGTTTTT
TTGAAGTTTAGCTTCTTGTGCTCTTTATATATTTTGAATATTGGCCCTCT
ATTGAATTTGGGGTTAGTGAAGATTTTTTCCCAATTTGTAGATTGCCAAT
TTGTCTAATTTCTTTTGCCTTAGAGAAGCTTTCCATTTTCATGAGGTCCC
ATTTATCAATTCTTTATCATAGATTGTGAGCCATTGGAGTTCTGCTTAGG
AAATTTTCCTCTGTGCCAATAATTTTTTTGCTCTTTCCCATTTTCTCTTC
TATTAGATTCTTTGTATCATTTCCNATGCAAATCCCCTTGATCTATTTGG
ACTTGATTTTTGTCCCCCCCCCCCAAAAAAAAAAAAAATTATTATTTTGC
GTGGTGCATATCCAATGTTAGACCAGTGCCATTCTATTGAATATGCTTCC
TTACTCCCCACTCGCCTTTCTCTTGCCTCACATTTTGTTATTCTCCTATT
TCCTCTTAAATTCTTCCCCTCTACTTCTTCTTTCCTCTCTTTTCCCCACT
TTTACTTATTTTCCTTCTTTATTATTTTTTTCCTCCTTTTTCCATTTTTT
TTCTCTCTTATCCACTATCTTAACCCTCTTATCTCCTTTCCTTTCTTTCT
TTTCTCATTTTTTCTTCTCTTCATGTCTTCCTCTATTATATTATTTTATC
CTCATTCTATCTTTTACTCACTAAACCTCCGAATATCTTCTTATTTTTTA
TCAACTCTATATACCCCACTAATTTCATA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAGGTGCTAAAATCATTTATCTTTT
TGACATAACCATTCTACAGCTTTCTTTCTACATAATTCTTATTGCCCCTT
GAATATTCCAACCTATCTACCTATTACTTTGTGGCTTTAACATTTAGTTT
CTTTTCTACTCAGTCCATACCTTTCCTGGATATTGCCATAGTTCTTTCAA
TGAACCTCTATCTAACACACACACATACACACACACACACACACACACAT
ATATATATATATATATATATATCAGCAATTTTCTGAAAGAGATCTTTATG
AATCATTTTATATTTTTTAAACCCACCCCCCACATTTTTATATTATTTTT
GAATATGCAAATTATGACCCCCCACATTTGATTGTATATTTATTCAAATG
ATCTTATCAATGACTTTTTCCCCCATTACATCTCCATCACTTGCAAAAGT
ACTTGAGACACAGTAGGTCTCAGAAATCTTTATGCAAATGAACAAGTAAT
ACATACGCATGATTCATCTAATTGTCTCCAATTTTTCCTTATATAGTATT
ACTTGACCATAATTTTTTACTAATATCACTTTGAAAAATTCACGTAATGT
AGAACTCCTTGTCTCAATTATGAAGAAAAGCAGCAAATTAACATTTTTGC
TTTTGATGCTCCCCAGGTTATCGACAGAAGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_m08.g1 MSMg01no218_m08.g1 CHROMAT_FILE:
MSMg01no218_m08.g1 PHD_FILE: MSMg01no218_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:53 2005
         (290 letters)



>mm_chr5_78942337_78943029
          Length = 693

 Score =  323 bits (167), Expect = 8e-93
 Identities = 190/199 (95%), Gaps = 3/199 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataggtgctaaaatcatttatc---tttttgacataaccattctacagctttctttcta 57
           ||||||||||||||| | |||||   ||||||||||||||||||||||||||||||||||
Sbjct: 201 tataggtgctaaaattacttatcatctttttgacataaccattctacagctttctttcta 260

                                                                       
Query: 58  cataattcttattgccccttgaatattccaacctatctacctattactttgtggctttaa 117
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 261 cataattcttattgccccttgaatattccaacctatctacctattattttgcggctttaa 320

                                                                       
Query: 118 catttagtttcttttctactcagtccatacctttcctggatattgccatagttctttcaa 177
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttagtttcctttctactcagtccatacctttcctggatattgccatagttctttcaa 380

                              
Query: 178 tgaacctctatctaacaca 196
           |||||||||||||| ||||
Sbjct: 381 tgaacctctatctatcaca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 693
Length adjustment: 9
Effective length of query: 281
Effective length of database: 684
Effective search space:   192204
Effective search space used:   192204
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)