BAC Information

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BAC

Clone NameMSMg01-231D11
Chromosome5 (Build37)
Map Location 98,338,447 - 98,338,758
singlet/doubletsinglet
Overlap geneAntxr2
Upstream geneEG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneEG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231D11.T7 (MSMg01no231_d11.b1)MSMg01-231D11.TJ (MSMg01no231_d11.g1)
ACCAG398104AG398105
length685662
length of high quality
(start - end)
320 (4 - 323)254 (2 - 255)
definitionCHROMAT_FILE: MSMg01no231_d11.b1 PHD_FILE: MSMg01no231_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:27 2005CHROMAT_FILE: MSMg01no231_d11.g1 PHD_FILE: MSMg01no231_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGGATCCGCGGAATTCCATCACAATATGCATAACTAAATGGAATAAAAA
CAAAGTATACTTTTTTATTTATTTTACAAGGCATCTGCAACCACCATGTT
GCATTTACTAAGCATGTCTGTGATTGTTCTTTTGTCTGTACTCTGAATAT
TTTATATTTTTTTCACATTAGGGATGGGATCTTTATATACAAAGCAGCAA
TTTTTTAAGGCTTCTTTCTTATTTAAGGTTTCCTTTCCACCAATTCAGCT
ATTGGAAGTCAACTGTACTCTTCAAGTATTATATGGAGGCCTTCAGGAGG
AAACATTTAAATGTTGAATTTCCTAACTTTTCTGACCCCATGATATCATG
GGTGTTGCTGTGTCTGCCACGGACGGACATGCACCATTCTTCTGTGCAGC
GGATCCACACCGTATATGCGACCTCCCTGTTCCTCAGCTGGCATGCCATC
AGATTGGCAACCACTGTGCTTGTGGTCAGTTGACCTTATTTTATGTGATG
ACGGCCCTAGGGCACAAGTGAAAGTCTCTAAGGTGCTTTTTAAAATTGAA
AATGTTCGAGTTCTTCTCTTCAGGAAGGGCAGTTGTACGCCAGGGATGCT
AAGGTCTGCCATCAAAATGACCCTTCTGTCCACTAATTTCTGAGATAAAA
AAAAACATTGTTATTTCTGCCGTGATACTGCAGAG
ATCCGCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGA
AAACTTGTTCCCCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCATATTACTGGACATAGTACTACCGGAGGATCCAGCAATATCTCT
CTTGGCCACCTCCCCACAAGATGCCCCATCAGGTAAGAAGGACACATGCT
CCCCCACCCTCATAGCAACCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGTCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGAAACTCACACCATATGTATTCACTGATAATTGGATATTAGCC
TCCAACCTAGGATACCCTAGATATAAGATATAACTTGCTAAATCCCTGTA
CATTCATGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_d11.b1 MSMg01no231_d11.b1 CHROMAT_FILE:
MSMg01no231_d11.b1 PHD_FILE: MSMg01no231_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:27 2005
         (320 letters)



>mm_chr5_98338239_98338958
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattccatcacaatatgcataactaaatggaataaaaacaaagtatacttttttattta 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattccatcacaatatgcataactaaatggaataaaaacaaagtatacttttttattta 461

                                                                       
Query: 69  ttttacaaggcatctgcaaccaccatgttgcatttactaagcatgtctgtgattgttctt 128
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttttacaaggcatttgcaaccaccatgttgcatttactaagcatgtctgtgattgttctt 401

                                                                       
Query: 129 ttgtctgtactctgaatattttatatttttttcacattagggatgggatctttatataca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgtctgtactctgaatattttatatttttttcacattagggatgggatctttatataca 341

                                                                       
Query: 189 aagcagcaattttttaaggcttctttcttatttaaggtttcctttccaccaattcagcta 248
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagcagcaattttttaaggcttccttcttatttaaggtttcctttccaccaattcagcta 281

                                                                       
Query: 249 ttggaagtcaactgtactcttcaagtattatatggaggccttcaggaggaaacatttaaa 308
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 280 ttggaagtcaactgtactcttcaagtattaaatggaggccttcaggaggaaacatttaaa 221

                       
Query: 309 tgttgaatttcc 320
           ||||||||||||
Sbjct: 220 tgttgaatttcc 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)