Query= MSMg01no231_d21.b1 MSMg01no231_d21.b1 CHROMAT_FILE:
MSMg01no231_d21.b1 PHD_FILE: MSMg01no231_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:29 2005
(322 letters)
>mm_chr5_70406863_70407583
Length = 721
Score = 574 bits (297), Expect = e-168
Identities = 313/319 (98%), Gaps = 3/319 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaagctttaattaatgtgtcaaaaacattaggatcccattcaggtcttactctg 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcaaacctttaattaatgtgtcaaaaacattaggatcccattcaggtcttactctg 462
Query: 65 ttgcaaagagacttttctaattcattcctattcttctaattgcttatctcttccattctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgcaaagagacttttctaattcattcctattcttctaattgcttatctcttccattctg 402
Query: 125 ctgacagctctagctattcaacattcttataaccatgaaaattgtcatgggggtt-tggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 401 ctgacagctctagctattcaacattcttataaccatgaaaattgtcatgggggttgtggg 342
Query: 184 ggagcaactcttacgtgtaagttaagatgtctaaagctctggagcttcttaattttctaa 243
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 341 gg--caactcttacgtgtaagttaagatgtctaaagctctggagattcttaattttctaa 284
Query: 244 tgtaaactaaaaagatttctgtttgcactaaaatgtaaggaaagagtccttggtggcact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtaaactaaaaagatttctgtttgcactaaaatgtaaggaaagagtccttggtggcact 224
Query: 304 ttcccactcagggacgtac 322
|||||||||||||| ||||
Sbjct: 223 ttcccactcagggaggtac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space: 222856
Effective search space used: 222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_d21.g1 MSMg01no231_d21.g1 CHROMAT_FILE:
MSMg01no231_d21.g1 PHD_FILE: MSMg01no231_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:29 2005
(291 letters)
>mm_chr5_70292882_70293572
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Plus
Query: 1 ctgaggttttttaataggaccctgaagttggttcagaatagacatggaaaatgtccatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaggttttttaataggaccctgaagttggttcagaatagacatggaaaatgtccatca 260
Query: 61 ttcattattctggcaatggcctgtttatctggtggtttcttttactcttaatagatgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattattctggcaatggcctgtttatctggtggtttcttttactcttaatagatgata 320
Query: 121 atctataattctgaacactaaactctatggtaagagcaatcaattatgttttttctttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctataattctgaacactaaactctatggtaagagcaatcaattatgttttttctttcc 380
Query: 181 atatttgaaaagttcatatagacacttagagcattcatctgagattcaagcttgatcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttgaaaagttcatatagacacttagagcattcatctgagattcaagcttgatcttt 440
Query: 241 aagtattttggaattagcaccaaaatgcctttgcttcagcagaaaaaaaat 291
|||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgttttggaattcgcaccaaaatgcctttgcttcagcagaaaaaaaat 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
