BAC Information

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BAC

Clone NameMSMg01-231H23
Chromosome5 (Build37)
Map Location 52,405,207 - 52,500,549
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231H23.T7 (MSMg01no231_h23.b1)MSMg01-231H23.TJ (MSMg01no231_h23.g1)
ACCAG398295AG398296
length723728
length of high quality
(start - end)		321 (45 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no231_h23.b1 PHD_FILE: MSMg01no231_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:48 2005CHROMAT_FILE: MSMg01no231_h23.g1 PHD_FILE: MSMg01no231_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,500,289 - 52,500,549)(52,405,207 - 52,405,497)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGGGGTGAAGCTGTCTGTCTGTTTTGGTGGAGCCAACTGTAACC
ACCTGATGCTTTTTCCCTCTTGCCGATGGGCCTTGCTAGATACTCGAGTT
TATTACTCTATTTGATTTGGATAGTTGATCTGGTCAGAGAAACAGAGTCT
TTAGATTGGTCAAATTTCTGAATCAAGAAGAATGATTTTACAATTACTCA
GATACATTAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCACACACACACACACACACACAGTATGCATACACATTTAGGT
ATGCATTCATGTCTTTTTATACACGCCCTCCTATCAGTTTGGTTATGTTT
TCAATTCAGACTGAGACTTGCTTTTCTCATCACCCCCCGTTTTTCCAGGA
GTCTTCTGTAAGGAGNTGTGCNCCTAATACTCCTGTCCATCACGAANCTT
TCATGCCTCTTCGTGGTTGGGCCCTTATATCATGGCCTTCCACACTGGAG
NTGTGGNAAGGGGAGGGACGACATTTGATGTCAGAAGCNANACGGAGAGT
ATGTTTCTCGCTGGTTTCTTTGGTATTGGCACTCAAGCGGNATTTAGCAT
AGTGCCTGCCTTGCTTNCTGATTGAGACTGTTATCCTCTCCCCTCCGCAT
TTTTTTGTCTAGTGCTCTTGTTC

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATATGGGAAATAAAAAAGAAAC
GGTAAATCACAATCTGTGATATATCTCAGACAAACAGAGATCTCATAGCA
GGCAAGTGGTTCAATCTCAATGAACGAAGGGAAGCAAAGAGTCTGGAAGG
AACAGATAGCCCAATCCTGACTTCTGAGAGAGTTTTCTGTCATAATAAAG
TTTTAAGGACAGCCAGAGGACATCCTATTTGGAACTTGCATTCATTCTGT
GTTGCAATTGGTCCAGAATTCCTCACAGCCCAGTCCCAGCATCATAAAAA
GCTGTACTCTTGGGTGTTTTTCTCAGCCCCCGCCCCTTCTGAAGTGCACT
GACCTCAGAGATGGGCTGTAACCACCTTTAGACTTAGGAATGGTGCATCT
CCTCCCTCTCATTTTGTCACCCCCTCCCCCACCCCAAATCATAAGTTTCA
GGCTCCAGCATCACCTTCATCACCCAGCCCTACGCCCAAGGCCCAGAAAA
TGACCAAACGAATAATGAATTCATTAGGAGATCAGAGTTCTGTCCTTGGA
GTCAGAGAAAAAAGTAAAGACACTTTACATTGGGTTTTGTTTAAAAAAAG
ATGCATGGAGAGATGAAATGGGNAATGGCTCTTTGTTGCTGACTAAAGTC
CACAGGTCCAAATAGCAGCCAAGGACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_h23.b1 MSMg01no231_h23.b1 CHROMAT_FILE:
MSMg01no231_h23.b1 PHD_FILE: MSMg01no231_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:48 2005
         (321 letters)



>mm_chr5_52500132_52500852
          Length = 721

 Score =  466 bits (241), Expect = e-136
 Identities = 256/261 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgggggtgaagctgtctgtctgttttggtggagccaactgtaaccacctgatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaattcttgggggtgaagctgtctgtctgttttggtggagccaactgtaaccacctgatg 359

                                                                       
Query: 65  ctttttccctcttgccgatgggccttgctagatactcgagtttattactctatttgattt 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctttttccctcttggtgatgggccttgctagatactcgagtttattactctatttgattt 299

                                                                       
Query: 125 ggatagttgatctggtcagagaaacagagtctttagattggtcaaatttctgaatcaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggatagttgatctggtcagagaaacagagtctttagattggtcaaatttctgaatcaaga 239

                                                                       
Query: 185 agaatgattttacaattactcagatacattaaaactctctctctctctctctctctctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agaatgattttacaattactcagatacattaaaactctctctctctctctctctctctct 179

                                
Query: 245 ctctctctctctctctctctc 265
            ||||||| ||||||| ||||
Sbjct: 178 gtctctctgtctctctgtctc 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no231_h23.g1 MSMg01no231_h23.g1 CHROMAT_FILE:
MSMg01no231_h23.g1 PHD_FILE: MSMg01no231_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:48 2005
         (291 letters)



>mm_chr5_52405007_52405697
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatatgggaaataaaaaagaaacggtaaatcacaatctgtgatatatctcagacaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatatgggaaataaaaaagaaacggtaaatcacaatctgtgatatatctcagacaaaca 260

                                                                       
Query: 61  gagatctcatagcaggcaagtggttcaatctcaatgaacgaagggaagcaaagagtctgg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gagatctcatagcaggcaagtggttcaatctcaatgaaagaagggaagcaaagagtctgg 320

                                                                       
Query: 121 aaggaacagatagcccaatcctgacttctgagagagttttctgtcataataaagttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaacagatagcccaatcctgacttctgagagagttttctgtcataataaagttttaa 380

                                                                       
Query: 181 ggacagccagaggacatcctatttggaacttgcattcattctgtgttgcaattggtccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacagccagaggacatcctatttggaacttgcattcattctgtgttgcaattggtccag 440

                                                              
Query: 241 aattcctcacagcccagtcccagcatcataaaaagctgtactcttgggtgt 291
           |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aattcctcacagcccagtcccagcatcataaaaagctgcactcttgggtgt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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