Query= MSMg01no231_i18.b1 MSMg01no231_i18.b1 CHROMAT_FILE:
MSMg01no231_i18.b1 PHD_FILE: MSMg01no231_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:52 2005
(616 letters)
>mm_chr5_48518689_48519704
Length = 1016
Score = 1156 bits (598), Expect = 0.0
Identities = 609/613 (99%)
Strand = Plus / Minus
Query: 4 ggaattagtctcttacaaacttcatccaacagagaacaaccctaaactcagtagtttagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ggaattagtctcttacaaacttcatccaacagagaacaaccctaaactcagtagtttagg 757
Query: 64 gaatatatattcagtacatatataatatcatttcgacatgtttacattgtctgtaagaaa 123
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaatatatattcaataaatatataatatcatttcgacatgtttacattgtctgtaagaaa 697
Query: 124 aagaaaagtccataggctttttatttgttcaaataaatttaaatatgtaaaccggcacat 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 696 aagaaaagtccataggctttttatttgttcaaataaagttaaatatgtaaaccggcacat 637
Query: 184 cagccaataacaaattgaacattaaacctgcctaaatcactttgataattttacaaagtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cagccaataacaaattgaacattaaacctgcctaaatcactttgataattttacaaagtc 577
Query: 244 agagttttccagggaagagcatcagcttgttttgttttatgattttctatcacttggtaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agagttttccagggaagagcatcagcttgttttgttttatgattttctatcacttggtaa 517
Query: 304 gtcttatggggtaaaatgttaggtagcaagattagtggaaggagttatttgaagcatgga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtcttatggggtaaaatgttaggtagcaagattagtggaaggagttatttgaagcatgga 457
Query: 364 aggtacaaagtcaatggcaggtaaaagtgtatcttagggaggaaagcctgtggtagaggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aggtacaaagtcaatggcaggtaaaagtgtatcttagggaggaaagcctgtggtagaggt 397
Query: 424 acatgctcaaagatctttatatcctggggtaaacaccagacccagttaacctagagggga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acatgctcaaagatctttatatcctggggtaaacaccagacccagttaacctagagggga 337
Query: 484 gaaacagatataaagattaaggcatactataatctcctgagagtcaaatgtcaataggaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaaacagatataaagattaaggcatactataatctcctgagagtcaaatgtcaataggaa 277
Query: 544 aaatcaagtgtgtgtttgtgtgtgtaatatatgactaanataattataaaagacaggaac 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 276 aaatcaagtgtgtgtttgtgtgtgtaatatatgactaaaataattataaaagacaggaac 217
Query: 604 atgagtttaagag 616
|||||||||||||
Sbjct: 216 atgagtttaagag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_i18.g1 MSMg01no231_i18.g1 CHROMAT_FILE:
MSMg01no231_i18.g1 PHD_FILE: MSMg01no231_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:52 2005
(640 letters)
>mm_chr5_48472257_48473295
Length = 1039
Score = 1207 bits (624), Expect = 0.0
Identities = 636/640 (99%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 1 cctgaaaggctacatggaatcactttgacttctgcctcttcacccaggatgaataccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaaaggctacatggaatcactttgacttctgcctcttcacccaggatgaataccata 260
Query: 61 gaatgtggtattcagcctaaatcaatattaattttggtttccattttcaaactgagacag 120
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgtggtattcatcctaa-tcaatattaattttggtttccattttcaaactgagacag 319
Query: 121 gagcagaagttgaggttaccactggcagaccagagtgcctcgttataaatcaatgcacag 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagcagaagttgaggttaccagtggcagaccagagtgcctcgttataaatcaatgcacag 379
Query: 181 tacgactcgggcctaatgtgctgtttataccgtggatagcagcaagggaggcggtgaact 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacgacccgggcctaatgtgctgtttataccgtggatagcagcaagggaggcggtgaact 439
Query: 241 cgattttaataatgtgtctgttgtgctgacaccattgaaagaacattggaggaagggttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgattttaataatgtgtctgttgtgctgacaccattgaaagaacattggaggaagggttg 499
Query: 301 agccttctctgcacctgtttctgaactatttctgtctactctggttcagttttaagtgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agccttctctgcacctgtttctgaactatttctgtctactctggttcagttttaagtgat 559
Query: 361 ctgttattcctctcagaaatggaggcacacactctgagtacttgtgcagtctccccttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgttattcctctcagaaatggaggcacacactctgagtacttgtgcagtctccccttta 619
Query: 421 atagatctctgccagagtcacccattgtttcagaggcaggtggctgctcaactatgctag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atagatctctgccagagtcacccattgtttcagaggcaggtggctgctcaactatgctag 679
Query: 481 gttgcctggaaacgctccttcagtgcaaagccctccagccacttctccatccctccaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttgcctggaaacgctccttcagtgcaaagccctccagccacttctccatccctccaggg 739
Query: 541 ccagtgcttaaacactcagagaatcccaccactggtggtttcttttgaaatctccctggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccagtgcttaaacactcagagaatcccaccactggtggtttcttttgaaatctccctggc 799
Query: 601 gaagtaagtgcagaaaatagaaagtttcccattctatggt 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaagtaagtgcagaaaatagaaagtttcccattctatggt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space: 648270
Effective search space used: 648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
