BAC Information

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BAC

Clone NameMSMg01-231P23
Chromosome5 (Build37)
Map Location 11,997,672 - 11,997,779
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231P23.T7 (MSMg01no231_p23.b1)MSMg01-231P23.TJ (MSMg01no231_p23.g1)
ACCAG398645AG398646
length759732
length of high quality
(start - end)
277 (45 - 321)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no231_p23.b1 PHD_FILE: MSMg01no231_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:23 2005CHROMAT_FILE: MSMg01no231_p23.g1 PHD_FILE: MSMg01no231_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGCTGATTTCTCTAAGTCCTGTAGCAAAACTATGTGGTCTATCCA
GCAATAGGGACTTACCATGTAGCTCTGGCCTTAGTGAGTTATGTGAGAGA
GGCAGGGCAGAGGGATGGAACTGACGGTGTGGTATGTGTTGAGTGTCATA
TTGGAGGGAATTTAATTGGAGAATGTAGTGTTGTGTAGATGTAATCATAT
TGCATTGTATTCAATTAAAAAAAAATAACCTCTTAGGCAATCAAGGAAGC
TCCCATCTGTAATCTCCAGGGATTATTTTAGGAGGGTTCCTATCAATCTT
AGACAACCCTGATTTTTTTTGTAACCCCCTGCCTCAAAGTAAAAGCAAAC
AAACAAAATTTCTTTAAATGCCCCCCACTAAGAATAGTTAGTAATGAAGA
GTGCATCATTGAAATACATTTACATATCTTAAAGCACGACTATACTATCC
ACTGTCATCACACTTCCCGTACCTAAGTGCTACTATTCTGCTCCATACCT
CCTCAATGCGATTCCTATCTTTGCACATTTTTTACACTTTATCTACATCC
CTCTCCTTCGTTGTATATCCTCTTTCCTCGACTACTCATATACCCCCCAT
GTTTCTACATCTAAACCACTGCCCCCATTTCCTGCCCTGTTTTTATTACT
CCTTTATACTCCCCATCCTACCCTGTCCCCTCTATTGGTTCTACTTTCCC
GTTGATACC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGATTGATCACATATACACGGT
GATACAGGTCTAGGAAAAAGTTTAGACCTTTTTTCTCAGTGAGCAGAGTG
AGTCACATGGTGACTCCAGTGTGCAGAAATCTTTTTTTTTTTCATTTTTT
ATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTACTCC
ATACCCACCCATTCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCC
TGGCATTCCCCTGTAGAAATCTTAAACAAAGGAACACAGGGACAAGACAG
GATGGCTTTTCTAAGGATTAGAGCCCGACAGCAAAAGATGCCTGCTTCCT
ACAAGCAGGTGATCAAAGGATAGACTTCAAAAGTTTGGTTTAACTGTTTT
TATGATAGAAGAGAATATACAGATTTTGCCCAAGCCAGTTGGGAATTCTT
CCCATAGTTCAGAACTAATAAAAGAGTTTGTACTCAGAAGGCTGGGGTCA
CCTGCTGTGCAGAGACAGGCTGCCTGGATGAAGGCAGAAAGAGGCAGAGA
GTCAAGGCTGCTGGCCTCCAGCAAGCAGACAGAGGATAGCGATAAAGGAA
ATTTGACGTAATATTTTTTTAAGGATAGAAGACTGGATATGGTAATTGTT
TAAATGTTCTTAAGTACAGAGAAATATTAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_p23.g1 MSMg01no231_p23.g1 CHROMAT_FILE:
MSMg01no231_p23.g1 PHD_FILE: MSMg01no231_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:23 2005
         (290 letters)



>mm_chr5_11997473_11998163
          Length = 691

 Score =  170 bits (88), Expect = 7e-47
 Identities = 103/108 (95%), Gaps = 1/108 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagattgatcacatatacacggtgatacaggtctaggaaaaagtttagac-cttttttc 59
           ||||||||||||||||||||| ||||||||||||||||||||||  |||||  |||||||
Sbjct: 307 taagattgatcacatatacacagtgatacaggtctaggaaaaagggtagacttttttttc 248

                                                           
Query: 60  tcagtgagcagagtgagtcacatggtgactccagtgtgcagaaatctt 107
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcagtgagcagagtgagtcacatggtgactccagtgtgcagaaatctt 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)