Query= MSMg01no232_d11.b1 MSMg01no232_d11.b1 CHROMAT_FILE:
MSMg01no232_d11.b1 PHD_FILE: MSMg01no232_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:39 2005
(320 letters)
>mm_chr5_9907054_9907772
Length = 719
Score = 549 bits (284), Expect = e-161
Identities = 308/316 (97%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagaaatgtttctatggaatgattatgtagaattactgaactccccatatcatg 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaattcagaaatgtttctatggaatgattatgtagaattactgaacttcccatatcatg 263
Query: 64 taggagcatctggtgctctagttaatatatactcagtattattagattaatttcagtaaa 123
||||||||| ||||| | ||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 264 taggagcatgtggtg-tttagttaatatatactcaatattattagatttatttcagtaaa 322
Query: 124 taatattgtttatgtattgtagtggctattcctggttgtcaacttgactatatttggaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taatattgtttatgtattgtagtggctattcctggttgtcaacttgactatatttggaat 382
Query: 184 gaattacaattcagaatcggaagtgacccttatctggaggcttggaaataaaagtttctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaattacaattcagaatcggaagtgacccttatctggaggcttggaaataaaagtttctg 442
Query: 244 atctggatcttggtatggagatcttgaggcatagtggttatggattccagaaaattaaat 303
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 443 atctggatcttggtatggagatcttgaggcatagtggctatggattccagaagattaaat 502
Query: 304 ctctgagttcaaggtc 319
||||||||||||||||
Sbjct: 503 ctctgagttcaaggtc 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_d11.g1 MSMg01no232_d11.g1 CHROMAT_FILE:
MSMg01no232_d11.g1 PHD_FILE: MSMg01no232_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:39 2005
(657 letters)
>mm_chr5_10030896_10031952
Length = 1057
Score = 891 bits (461), Expect = 0.0
Identities = 476/485 (98%), Gaps = 8/485 (1%)
Strand = Plus / Minus
Query: 1 ctttcatggcttgctcttactcactggttgaaagtatgtatgtataaaagggggtgctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctttcatggcttgctcttactcactggttgaaagtatgtatgtataaaagggggtgctag 422
Query: 61 atacattaaaagtcaagaatatgtgttaatatagtttccaaataaagagaaattttattc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgcattaaaagtcaagaatatgtgttaatatagtttccaaataaagagaaattttattc 362
Query: 121 tgaagattaaaattagtaccaacattaattacaaaccttataatgaattttactcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaagattaaaattagtaccaacattaattacaaaccttataatgaattttactcagaag 302
Query: 181 gaagttataattttctaaccatagttagaatccaagatagtctttgaataataaagaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagttataattttctaaccatagttagaatccaagatagtctttgaataataaagaata 242
Query: 241 ctttctaaagataatttctgaaatatggttaaagcataagattcagttgtatgacatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttctaaagataatttctgaaatatggttaaagcataagattcagttgtatgacatcaa 182
Query: 301 agttgttactagcttctggctatcacaaatatggctgctatgaaca----ccccgaaaca 356
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 agttgttactagcttctggctatcacaaatatggctgctatgaacatagt----gaaaca 126
Query: 357 tgtacccctgtggcatggtggggaattttttaggtatattcccaagagtggtatagctgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgtacccctgtggcatggtggggaattttttaggtatattcccaagagtggtatagctgg 66
Query: 417 gtcttcaggtagatcgatttccaattttctgagaaacctccagattgatttccagagtgt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gtcttcaggtagatcgatttccaattttctgagaaacctccagattgatttccagagtgt 6
Query: 477 ttgta 481
|||||
Sbjct: 5 ttgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
