BAC Information

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BAC

Clone NameMSMg01-232G05
Chromosome5 (Build37)
Map Location 14,737,185 - 14,737,784
singlet/doubletsinglet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G05.T7 (MSMg01no232_g05.b1)MSMg01-232G05.TJ (MSMg01no232_g05.g1)
ACCAG398914AG398915
length723733
length of high quality
(start - end)
617 (46 - 662)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no232_g05.b1 PHD_FILE: MSMg01no232_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:52 2005CHROMAT_FILE: MSMg01no232_g05.g1 PHD_FILE: MSMg01no232_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCAGCATGCTCGAGCTTAGAATCTCTGTTGTTTTCTCACAAAGT
AGAGATTAACTTTCATTAATATTCTAAGAATACCATTATCTTCTTTAGGA
ACTTACTGAACTCCTTGAAAAAATGGATTACAATGATGCCTTTCTCTTGA
TTTCTGAGATTTCTCAGAATGCTATTGTGTCTGTGAGTGAGTTTGATCCA
GATACCTAGAACTACTATTTTGATGCCTGCTGATTCATTTTTCTTGAATA
CAAGGAGGTTTATTAGATCTGAAACTTTCCTTTTAGTTATACAAAATACT
AAAAATTTTGGTTTTGAGGATCTTACATCAGAACAAATTTCAATAGATTA
ATCTTTTTCTTTAACCCCCCAATTTAAGTACCATCACGCCCGCCGTACGG
TCAAAAACAATTGTTGACCCTTCATAGTGTATACTTAAATCAAAATGGCT
ATTATACATGTTGATATCTTTTCTTGGACTCACATATTGTAATGTGGTTT
ACCATTTACTGAAGCATCTTAGTGCAGTGCATGATCACATAATCTACTTA
GGTCTCATGCATGTGTGACAGCTTTTATGAGTTCATATGTGCCACAACTA
TATAACATTCAGAACACAAACCTTTACTGCACTCTTCCTTAATTCTCTAG
ATCTTATAGTCTCTCTTTTCCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGCAATGTAAAAAATAAATAA
TAAATAAATAAAAGGGCTTGCTTCTCTTTCTAAGAATCAAGGGTCTGGGG
TCTAGGGATGCTGATTTATAGGATCAAAAAGGAACCTGGAGTAATGACTG
AATTGATAGTAAATAAAAGACTGGATATTTGATCTGCAAGAGATGTGCTA
TCCAAAGAGGTTTTAGAGTAGCAAGAGAAAGCTGTTTCTTTTCTCTAACT
GTTTCTGCTCTCAAACACCCCTCCTCTCAGGGCCTCCTGGTCCTTGGCAA
TGACAACTCCTATTTTATAAATTATCCGACCTGTGCCTCCATTTTAAGCC
CTGCATCTCACTACTTTCCCCAGCACAAAACTACAAAAAAAATGAAGCAG
AGGTGGTAGGAGGGAGGGGGCTCAACTATGTCTTGTGCTCTCTCATGTTG
CTTAATCTTTGACCATGAAGTTTCTCCTTATTTAATCTCCAGCTAGAATT
ATTCCAGATATATACAAATGTTTTTATTCCCAAAGCTATCTGAAAAAGGA
AATTCTTCTTCTTCCAGGAAAACTTTCTTAATCTAAGCTCAAATGCAGAG
TACCTTGATACTCATATGTTCATTGACCTATATGATACTATATCCTAATT
ATTCACCAGTCTGTGGAAGAAACTCACCATCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g05.b1 MSMg01no232_g05.b1 CHROMAT_FILE:
MSMg01no232_g05.b1 PHD_FILE: MSMg01no232_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:52 2005
         (617 letters)



>mm_chr5_14736982_14737994
          Length = 1013

 Score =  965 bits (499), Expect = 0.0
 Identities = 579/621 (93%), Gaps = 28/621 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcagcatgctcgagcttagaatctctgttgttttctcacaaagtagagatta 63
           |||||||||||||| | | || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattctgcagcaggat-gaacttagaatctctgttgttttctcacaaagtagacatta 262

                                                                       
Query: 64  actttcattaatattctaagaataccattatcttctttaggaacttactgaactccttga 123
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 actttcattaagattctaagaataccattatcttctttaggaacttactggactccttga 322

                                                                       
Query: 124 aaaaatggattacaatgatgcctttctcttgatttctgagatttctcagaatgctattgt 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaaatggattacaatgatgcttttctcttgatttctgagatttctcagaatgctattgt 382

                                                                       
Query: 184 gtctgtgagtgagtttgatccagatacctagaactactattttgatgcctgctgattcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtctgtgagtgagtttgatccagatacctagaactactattttgatgcctgctgattcat 442

                                                                       
Query: 244 ttttcttgaatacaaggaggtttattagatctgaaactttccttttagttatacaaaata 303
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 ttttctcgaatacaaggaggtttattagatctgcaactttccttttagttatacaaaata 502

                                                                       
Query: 304 ctaaaaattttggttttgaggatcttacatcagaacaaatttcaatagattaatcttttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 ctaaaaattttggttttgaggatcttacatcagaacaaatttcaatagattgatcttttt 562

                                                                       
Query: 364 ctttaacccccca-------atttaagtaccatcacgcccgccgtacggtcaaaaacaat 416
           ||||||      |       |||||||||||||||||||    |||||||||||||||||
Sbjct: 563 ctttaa------atatagtaatttaagtaccatcacgcc----gtacggtcaaaaacaat 612

                                                                       
Query: 417 tgttgacccttcatagtgtatacttaaatcaaaatggctattatacatgttgatatcttt 476
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgttgacccttcatagtgtatacctaaatcaaaatggctattatacatgttgatatcttt 672

                                                                       
Query: 477 tcttggactcacatattgtaatgtggtttaccatttactgaagcatcttagtgcagtgca 536
           |||||||||||||||||||||||||||||||||||||||||||||          |||||
Sbjct: 673 tcttggactcacatattgtaatgtggtttaccatttactgaagca----------gtgca 722

                                                                       
Query: 537 tgatcacataatctacttaggtctcatgcatgtgtgacagcttttatgagttcatatgtg 596
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgatcacatcacctacttaggtctcatgcatgtgtgacagcttttatgagttcatatgtg 782

                                
Query: 597 ccacaactatataacattcag 617
           |||||||| ||||||||||||
Sbjct: 783 ccacaactgtataacattcag 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1013
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1003
Effective search space:   608821
Effective search space used:   608821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)