BAC Information

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BAC

Clone NameMSMg01-232L07
Chromosome5 (Build37)
Map Location 29,311,506 - 29,440,000
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232L07.T7 (MSMg01no232_l07.b1)MSMg01-232L07.TJ (MSMg01no232_l07.g1)
ACCAG399130AG399131
length737789
length of high quality
(start - end)
317 (47 - 363)290 (126 - 415)
definitionCHROMAT_FILE: MSMg01no232_l07.b1 PHD_FILE: MSMg01no232_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:15 2005CHROMAT_FILE: MSMg01no232_l07.g1 PHD_FILE: MSMg01no232_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,439,688 - 29,440,000)(29,311,506 - 29,311,793)
sequence
CTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCTAATCCCGAAAAATAAATTTATGGACAGGGTAGGAATGCA
TTTTCCAGAGTATTTGACATTGCCCATCACTTATCCTTTCGACTGCTCAG
CTATGGGAAATACTCTTGAGGAGGATATACTTGGCAGGTGTGTGCAGCTA
GGTCACATATGCTTCCTAGAAGGGATGCCTGAGGACATCATGTGTTTCCA
GGGTGATATGTTGTGGTTAGATGTAGAAATCGCTCACTTCCTGTACTGAA
GTTCCCATTCCCATGGTGACTGAATTTGGACACTGGGGCATGCGATACAT
ACTAGAATCACAGTATTGTGCATCCGCCCGATGACACTGGACCTTGGAGT
GCAGAATAGGCACCACAGCCCCCGCCGAGTCATGGTAGGACCAACAAGTA
CGAAAACCTGACAAGAGTCCTTATTTGCCCTCTTAACTGTAGATCCTAAG
AAAGTACATATCTAATTGCACACTGATCATCCTGTCATATTGTCACTTTC
CTTTTTTCATCGCTTACTTTTACTGACGCGTCCCAAATGCTTTAACCTCT
CTTCTAGCCCACTGTTTTTCACACGTTATGTTCCACAAAATGCATCACGA
TGTGCCCTACCCCAGCCTGCCCTTCCATGCCTTCCCCCTATTCCTTGTCT
TCCTTGTTCCACCCTTTTCCCCTTTTCCCCTTCATCN
CTCCTTTTCCTTTACTTTATAATTTAACCTATTAAAAAACTTCNNNTTTT
CTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATTAAAAGTTCTCTCAGTGGCCTT
GGGTACTACAACAGGAGAATGGTATGTCTTCTGTCCTTTCATGCACTTTA
GGAGCAGTTCTAAGATGCGTTTTACTTTCTTTGTGATGTCATAACAGAGA
CAATAAATGTTATTAGGCACTGAACATTTTCAGCATTTCATCATTACTTG
AATACTTCTCAGATTCAGTTGTTTTTGAGAGACATATCACCCTGGGAGGT
AGGTATGGTTAGAAGTGCTTCCTATCACACTTGCCCAAAGCATACTGAGT
CCTTCGCTCCAGGTTATTTCTTCACCACCCACCCCCCCACTTGGTCCTTA
TTTCATATCCTGATGGTTCAGCCCCACACGGAAGTCTTACCCCAGTCTGA
GCTGCACAAAGGCTGCCACAGGTAGGGCGATCTCTGGAGAACAGATTTAC
TTCTCACAGTCCTTGGGGCTGGCAAGTCGAAGATCTAGGGACCAGTATCT
GATGAGGACCTTTGTGCTACCATCCAAGGAACATCCTAAGATGGAAGGAG
ACAATGGTGGTACCCCTGTACCTAATAAACCAACTCTAACATAACTAGCC
GCATTTACTACCTCATGAAATGTACCATCTTTCAATATGATTGCATTGAA
TATTTATCTTCAGGGCTTGATAATAATACACAACAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_l07.b1 MSMg01no232_l07.b1 CHROMAT_FILE:
MSMg01no232_l07.b1 PHD_FILE: MSMg01no232_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:15 2005
         (317 letters)



>mm_chr5_29439484_29440200
          Length = 717

 Score =  551 bits (285), Expect = e-161
 Identities = 306/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtctaatcccgaaaaataaatttatggacagggtaggaatgcattttccagag 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcagtctgatcccgaaaaataaatttatggacagggtaggaatgcattttccagag 458

                                                                       
Query: 65  tatttgacattgcccatcacttatcctttcgactgctcagctatgggaaatactcttgag 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatttgacattgctcatcacttatcctttcgactgctcagctatgggaaatactcttgag 398

                                                                       
Query: 125 gaggatatacttggcaggtgtgtgcagctaggtcacatatgcttcctagaagggatgcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaggatatacttggcaggtgtgtgcagctaggtcacatatgcttcctagaagggatgcct 338

                                                                       
Query: 185 gaggacatcatgtgtttccagggtgatatgttgtggttagatgtagaaatcgctcacttc 244
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 337 gaggacatcatgtgtttccagggtgatatgttgtagttagatgtagaaatcgctcatttc 278

                                                                       
Query: 245 ctgtactgaagttcccattcccatggtgactgaatttggacactggggcatgcgatacat 304
           |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 277 ctgtactgaagttcccgttcccctggtgactgaatttggagactggggcatgcgatacat 218

                        
Query: 305 actagaatcacag 317
           |||||||||||||
Sbjct: 217 actagaatcacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_l07.g1 MSMg01no232_l07.g1 CHROMAT_FILE:
MSMg01no232_l07.g1 PHD_FILE: MSMg01no232_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:15 2005
         (290 letters)



>mm_chr5_29311306_29311995
          Length = 690

 Score =  495 bits (256), Expect = e-144
 Identities = 280/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaaaagttctctcagtggccttgggtactacaacaggagaatggtatgtcttctgtc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aattaaaagttctctcagtggccttgggtactacaacaggagaatgatatgtcttctgtc 260

                                                                       
Query: 61  ctttcatgcactttaggagcagttctaagatgcgttttactttctttgtgatgtcataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcatgcactttaggagcagttctaagatgcgttttactttctttgtgatgtcataac 320

                                                                       
Query: 121 agagacaataaatgttattaggcactgaacattttcagcatttcatcattacttgaatac 180
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 321 agagacaataaatgttattaggcactgaacgttttcagcatttcattattacttgaatac 380

                                                                       
Query: 181 ttctcagattcagttgtttttgagagacatatcaccctgggaggtaggtatggttagaag 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ttctcagattcagttgtttttgagagacatatctccctgggaggtaggtatggttagaag 440

                                                           
Query: 241 tgcttcctatcacacttgcccaaagcatactgagtccttcgctccagg 288
           ||||||||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 441 tgcttcctaccacacatgcccaaagcatactgactccttggctccagg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)