BAC Information

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BAC

Clone NameMSMg01-232O07
Chromosome5 (Build37)
Map Location 131,286,147 - 131,426,807
singlet/doubletdoublet
Overlap geneCaln1, Wbscr17
Upstream genePsph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneAuts2, 4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232O07.T7 (MSMg01no232_o07.b1)MSMg01-232O07.TJ (MSMg01no232_o07.g1)
ACCAG399258AG399259
length711753
length of high quality
(start - end)
309 (45 - 353)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no232_o07.b1 PHD_FILE: MSMg01no232_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:29 2005CHROMAT_FILE: MSMg01no232_o07.g1 PHD_FILE: MSMg01no232_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,426,503 - 131,426,807)(131,286,147 - 131,286,426)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTATCTTAAGCTGGTCATCTTTTCAGGAAGGAATTTTATGAC
CATCCCTTTAAGAAAGTACCCTCCCCTCCCCAGCTATACATCCACAAAAA
GCAATGGTGCTATTTCATGTTGTACTTTAAAAAAATATTGCTGGTCTTTT
CAGGCTTCAATTTTTTAGCTATTTTTATCCTCACGGTGCTGAGGAAAGAG
TTTGGCTTCAGGTCTGAGGAGCCTGTTGCTGGATTAGCGGAGCCTGGGCC
CTACCCAGCATGCACTTCTAAAACAACTTGACCCTGCTTTGCTGGCCAGT
GGTATTTTTTCAACCCCGCCCCAGTTGTGTCTTTGATGTTTTCACTTTGA
AAAAAAAAGTCCCCCCACGAGAGGCAACTGGAGTGTTTCAAATTAAGAAT
AGAATTGTTATATTTGTGCATGTGCATGGACGCCTGCCTGTGTGCGTCTA
AGTGCAGACATGTGCATACCATAGCATCTGCGTGGAGGTCACAGACAACC
TCTGGCCTTTGTCTTCACCCCCCAGCTTGTTTGAAATAGGATCTTTTTCT
ATTGTCCCTTGACCAGCACTCTCCGTTACCCAGGTCCCCCCTCCCTCACT
TTCCTACACTCTCTTGCCTGCCTTTCCGCCTTTTCTCTCACTGGACACTA
CAATCGCTTTG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACCTGGGACAGTTGGAAGAGAGG
AGGATTAGCCTAATTTCTGCTCAGGGAAGATGTGGTCCCCTACAGTGCTA
GTCTCAGTGGGAGTCAGGGATGGGGAAGACCTCAGGGTGGGCGGCCTGTG
GTGTGCCTCGGGCTTTGTCCTTTTAGTGGCCTGGCTTTCATCTTGTTGAG
AATTCAGAATTTCTCTGCAGCCAGGGCCCCCTGAGGCTCCAATCACAGCG
GGAGCAGGAGTTCAATTTCCCTTCTTCACTGTGAGTCTCCACTGGACGGC
TCCTTTTTTTATATACTTTTCCTGGCCTCCTGATGACAGATTTGTGGGGG
AAGGGTGTACCCCCCCCTTATAAATATTTCTTTTTTCTTTGCGTTTTCTT
CTTTCCTTTTCTCTTCATCCCTTTTTCCTTTCTTTTCCCTCTCCCTTTCT
CACTATTTCCATTACTCCTTTTTCCCCTATTCCCTCTCTCCTCTCTCTTT
TTTTTTCTCCCCTTTCTTCTTTTTCCCCCCTTTTTTTTTTCTTTCCCTTT
TTCTCTCTTCTTCTTCCTTTCCCCCTTTTTTTTCTTTCTCCCTCCCTCTC
CTTTTTTTCTCTTTTTTTTCCCTCTTTTCTTTTCTTTTCCTCCTTTTCCT
TTCTTTTCCTTTTTTTTCCCTTTTCCCCCTTTTTCTCCACCTTCCCCCTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_o07.b1 MSMg01no232_o07.b1 CHROMAT_FILE:
MSMg01no232_o07.b1 PHD_FILE: MSMg01no232_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:29 2005
         (309 letters)



>mm_chr5_131426299_131427007
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcttatcttaagctggtcatcttttcaggaaggaattttatgaccatccctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattctttcttatcttaagctggtcatcttttcaggaaggaattttatgaccatccctt 450

                                                                       
Query: 65  taagaaagtaccctcccctccccagctatacatccacaaaaagcaatggtgctatttcat 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taagaaagtagtctcccctccccagctatacatccacaaaaagcaatggtgctatttcat 390

                                                                       
Query: 125 gttgtactttaaaaaaatattgctggtcttttcaggcttcaattttttagctatttttat 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 389 gttgtactttaaaaaaatattgctggtgttttcaggcttcaattttttagctatttttat 330

                                                                       
Query: 185 cctcacggtgctgaggaaagagtttggcttcaggtctgaggagcctgttgctggattagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctcacggtgctgaggaaagagtttggcttcaggtctgaggagcctgttgctggattagc 270

                                                                       
Query: 245 ggagcctgggccctacccagcatgcacttctaaaacaacttgaccctgctttgctggcca 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 ggagcctgggccctacccagcatgcacttcaaaaacaacttgaccctgctttgctggcca 210

                
Query: 305 gtggt 309
           |||||
Sbjct: 209 gtggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_o07.g1 MSMg01no232_o07.g1 CHROMAT_FILE:
MSMg01no232_o07.g1 PHD_FILE: MSMg01no232_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:29 2005
         (280 letters)



>mm_chr5_131285947_131286626
          Length = 680

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacctgggacagttggaagagaggaggattagcctaatttctgctcagggaagatgtg 60
           |||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||
Sbjct: 201 cacacctgggacagttggaagagaggaggattagcctaaaatctggtcagggaagatgtg 260

                                                                       
Query: 61  gtcccctacagtgctagtctcagtgggagtcagggatggggaagacctcagggtgggcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gtcccctacagtgctagtctcagtgggagtcagggatggggaagacctcagggtgggagg 320

                                                                       
Query: 121 cctgtggtgtgcctcgggctttgtccttttagtggcctggctttcatcttgttgagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtggtgtgcctcgggctttgtccttttagtggcctggctttcatcttgttgagaatt 380

                                                                       
Query: 181 cagaatttctctgcagccagggccccctgaggctccaatcacagcgggagcaggagttca 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cagaatttctctgcagccagggccccctgaggctcctatcacagcgggagcaggagttca 440

                                                   
Query: 241 atttcccttcttcactgtgagtctccactggacggctcct 280
           |||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 atttcccttcttcactgtgagtctccactggacgtctcct 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)