Query= MSMg01no233_d01.b1 MSMg01no233_d01.b1 CHROMAT_FILE:
MSMg01no233_d01.b1 PHD_FILE: MSMg01no233_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:51 2005
(322 letters)
>mm_chr5_8715446_8716167
Length = 722
Score = 607 bits (314), Expect = e-178
Identities = 317/318 (99%)
Strand = Plus / Minus
Query: 5 gaattcaacttcaggatccgccaaaaggaagctggaggtacatcttcatcctagaaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaattcaacttcaggatccgccaaaaggaagctggaggtacatcttcatcctagaaaaca 287
Query: 65 tatacattacaacaggagaggtttcttttgttttgttttaatcattgattttactgtgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tatacattacaacaggagaggtttcttttgttttgttttaatcattgattttactgtgca 227
Query: 125 gagttctttcacaggcacaaagttttcttgtgttgttgagacaggttctcatttatttca 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 226 gagttctttcacaggcacaaagttttcttgtgctgttgagacaggttctcatttatttca 167
Query: 185 ggctggcttcaaacaaattgtgtcttgaatatctaatatatctgctttcaccatccaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ggctggcttcaaacaaattgtgtcttgaatatctaatatatctgctttcaccatccaagt 107
Query: 245 ggtgggcttagaagaggggtacaaatttttaaattaaatatttgtcctatttttatttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ggtgggcttagaagaggggtacaaatttttaaattaaatatttgtcctatttttatttct 47
Query: 305 tattagttgatagattgc 322
||||||||||||||||||
Sbjct: 46 tattagttgatagattgc 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_d01.g1 MSMg01no233_d01.g1 CHROMAT_FILE:
MSMg01no233_d01.g1 PHD_FILE: MSMg01no233_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:51 2005
(292 letters)
>mm_chr5_8616497_8617188
Length = 692
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%)
Strand = Plus / Plus
Query: 1 agtgggttacaacaaaataaagcaagcagacacatgacatataattacaaaggggatttc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgggttacaacaaaacaaagcaagcagacacatgacatataattacaaaggggatttc 260
Query: 61 ttgggcagaagttgttcaatgaggagtgtgagggagacaagagagtgatgtaggcacata 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggcagaagttgttcattgaggagtgtgagggagacaagagagtgatgtaggcacata 320
Query: 121 aaatgaccaaactacattatatacatattaaaaatggtaaaatttttaaaaactcagaat 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgaccaaactacactatatacatattaaaaatggtaaaatttttaaaaactcagaat 380
Query: 181 gcctttcatggaaactgataggtagatttgcacaatttatctggcaaaaggctaaaggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctttcatggaaactgataggtagatttgcacaatttatctggcaaaaggctaaaggac 440
Query: 241 aggattatctccaaatatgaagctataaaactttattatcaaacagtaa 289
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 aggattatctccaaatataaagctataaaactttattatcaaacagtaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
