Query= MSMg01no233_i02.b1 MSMg01no233_i02.b1 CHROMAT_FILE:
MSMg01no233_i02.b1 PHD_FILE: MSMg01no233_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:13 2005
(506 letters)
>mm_chr5_55221117_55222022
Length = 906
Score = 940 bits (486), Expect = 0.0
Identities = 496/500 (99%)
Strand = Plus / Minus
Query: 7 attccccattagccaaagtagcaattccatgtagtatggttggcactttcttttgaagag 66
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 706 attccccattagccaaagtagcaattccatgtagtatggctggcactttctcttgaagag 647
Query: 67 aacggccaatgtttttcatgcttttgtccagtgctggtgaccatgtctcattagtctaag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aacggccaatgtttttcatgcttttgtccagtgctggtgaccatgtctcattagtctaag 587
Query: 127 tcactttattgtgtgttctgaaaaattacctggctcttctctgagattatgagctctctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tcactttattgtgtgttctgaaaaattacctggctcttctctgagattatgagctctctg 527
Query: 187 agaaaatttaccattttttctttcctttaagcacgggccctgacatattttaggtacttg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agaaaatttaccattttttctttcctttaagcacgggccctgacatattttaggtacttg 467
Query: 247 ataaatttaataagtaaatgaatggctctggggatgcctggaaacttttaatcaaaagcc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ataaatttaataagtaaatgaatggctctggggatgcctggaaacttttaatcaaaagcc 407
Query: 307 tacaggagatttataccatactctattctgattatttcttacaggccaactaaactttaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tacaggagatttataccatactctattctgattatttcttacaggccaactaaactttaa 347
Query: 367 gtctttgtagtgttaatttattcactttacattagtagttcccatagatggttagaacat 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtctttgtagtgttaatttattcactttacattagtagttcccatagatggttagaacat 287
Query: 427 tatttttaaataccttggntctgtttccctcttgtatttttgtcatagntagagatactt 486
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 286 tatttttaaataccttggttctgtttccctcttgtatttttgtcatagttagagatactt 227
Query: 487 ttagaaatgaaatattttag 506
||||||||||||||||||||
Sbjct: 226 ttagaaatgaaatattttag 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_i02.g1 MSMg01no233_i02.g1 CHROMAT_FILE:
MSMg01no233_i02.g1 PHD_FILE: MSMg01no233_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:13 2005
(299 letters)
>mm_chr5_55155306_55156004
Length = 699
Score = 530 bits (274), Expect = e-155
Identities = 288/298 (96%), Gaps = 9/298 (3%)
Strand = Plus / Plus
Query: 11 acacacacacacacacacacacacacacacacacacgcacgcacgcacgcatgcacgcat 70
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 211 acacacacacacacacacacacacacacacacacacgcatgcacgcacgcatgcacgcat 270
Query: 71 gcacacacgcacacagaagcactcacaaacttaaatcttaataagaatagaagtttgtta 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcacacacgcacacagaagcactcacaaacttaaatcttaataagaatagaagtttgtta 330
Query: 131 attcatctaagccaacagaaaataagccagtctttcaaaaaattatcctaattattcttg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attcatctaagccaacagaaaataagccagtctttcaaaaaattatcctaattattcttg 390
Query: 191 cttacttctgtgctccgttaaaaaaaaaaaaaaa---------ccaacaaaccaaaaaac 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 391 cttacttctgtgctccgttaaaaaaaaaaaaaaaaaaaaaaaaccaacaaaccaaaaaac 450
Query: 242 taataccatgtaatccaggccatcacattccagaaatagtaatacagtaataagtgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taataccatgtaatccaggccatcacattccagaaatagtaatacagtaataagtgtt 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
