BAC Information

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BAC

Clone NameMSMg01-233K10
Chromosome5 (Build37)
Map Location 47,316,213 - 47,316,391
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233K10.T7 (MSMg01no233_k10.b1)MSMg01-233K10.TJ (MSMg01no233_k10.g1)
ACCAG399787
length733734
length of high quality
(start - end)
---179 (142 - 320)
definitionCHROMAT_FILE: MSMg01no233_k10.b1 PHD_FILE: MSMg01no233_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:24 2005CHROMAT_FILE: MSMg01no233_k10.g1 PHD_FILE: MSMg01no233_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCAAGTTGCGAAATGGGAAATTGTAAA
GATATGAGCGGGCGGGCCAGATTCGAGGGTGTGGAGGAATAGAAAACGAC
ATGTAAGTGAAGGGACATTAGGAAACAGTCAGTGCACTGTGACACTTGGC
AATAATCTCCCGGACACAGCAATGTCACCACAGCTGCCAAGACTGAGTGA
CTTCTCATCTGACACACTGGTTCCATGTTTATGACTTTGCTATGACATAT
AATCCACCTTTGAGTTTTTCATTATGTAGTGTTTTACTGCAATTTATTTT
TAACCTGTTTTTTTGTATCCCCCCCCCCCCCTCTTTAATGTATATCCATA
TATATATTAAGGTCCACCCCATGCTAAATGATGTGAGTCCTGGAGAAGTT
TATCTAAATTATATTCCCTAAGGATTCCTAGTACAGTTTATGATTAAAAC
AAGAGATATTTATTCACCTACCTCCAATCATTTTTTTAATTTCTGTTTCT
TGGAAACAATTCTATGTAAAGAATAGGTAGTTTGGTGTTTGAGGGCCCTA
TGCTATCCCCCACCTGCTCATTTAACATGTTATTACCTCTATCCCACGAG
TAAACAAGTACCTATAGGTGTGGATATCTTAATGCAAGCATAATTTTTGA
TTTAATTCATTGCCCTCGCCCCTTACCACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_k10.g1 MSMg01no233_k10.g1 CHROMAT_FILE:
MSMg01no233_k10.g1 PHD_FILE: MSMg01no233_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:24 2005
         (179 letters)



>mm_chr5_47316013_47316591
          Length = 579

 Score =  331 bits (171), Expect = 2e-95
 Identities = 177/179 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaacgacatgtaagtgaagggacattaggaaacagtcagtgcactgtgacacttggca 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gaaaacgacatgtaagtgaagggacattaggaaacaatcagtgcactgtgacacttggca 260

                                                                       
Query: 61  ataatctcccggacacagcaatgtcaccacagctgccaagactgagtgacttctcatctg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatctcccggatacagcaatgtcaccacagctgccaagactgagtgacttctcatctg 320

                                                                      
Query: 121 acacactggttccatgtttatgactttgctatgacatataatccacctttgagtttttc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacactggttccatgtttatgactttgctatgacatataatccacctttgagtttttc 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)