Query= MSMg01no233_k11.b1 MSMg01no233_k11.b1 CHROMAT_FILE:
MSMg01no233_k11.b1 PHD_FILE: MSMg01no233_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:24 2005
(699 letters)
>mm_chr5_47467977_47469078
Length = 1102
Score = 1226 bits (634), Expect = 0.0
Identities = 658/672 (97%), Gaps = 11/672 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaatcattcatgagacatatcatcatctcctattactttgtggatatctcaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaattcaaatcattcatgagacatatcatcatctcctattactttgtggatatctcaata 613
Query: 65 gttatcattttaggtaaaatattattttacaactaagccattttttccttttatgatact 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gttataattttaggtaaaatattattttacaactaagccattttttccttttatgatact 553
Query: 125 tgtcatttcacagaactccttctacccaagatcatgcacattttctcctatattttatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgtcatttcacagaactccttctacccaagatcatgcacattttctcctatattttatat 493
Query: 185 aaataagttttac---ttttatctctcttggctctttggtcactggtgcattatcttgat 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaataagttttactttttttatctctcttggctctttggtcactggtgcattatcttgat 433
Query: 242 tcagttttgagattctacatgagacttgggttgacagtttctctcccctccccttagttc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcagttttgagattctacatgagacttgggttgacagtttctctcccctccccttagttc 373
Query: 302 tcagttttcacagggattgatacacttgaaacacagcaatgttccactgacctttgtcag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcagttttcacagggattgatacacttgaaacacagcaatgttccactgacctttgtcag 313
Query: 362 tgcacggcctgcattattaagtattaataatagatcttgacattgagtattaataagtag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcacggcctgcattattaagtattaataatagatcttgacattgagtattaataagtag 253
Query: 422 ttgatgacattcttaattgttgtgggtttgcctgatttttagatttccttataaagttta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttgatgacattcttaattgttgtgggtttgcctgatttttagatttccttataaagttta 193
Query: 482 aatattttaaataattttacgcacagatactgggaatttaaacgtttcttactttctgtc 541
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 192 aatattttaaataattttacacacagatactgggaatttaaacgtttcttgctttctgtc 133
Query: 542 tgtctgtctgtctgtct--------atcttaatgtctgtcttctttctgtctgtctttct 593
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 132 tgtctgtctgtctgtctgtctgtctatcttaatgtctgtcttctttctgtctgtctttct 73
Query: 594 ctctctcgctctgtctttcttctttctctttttcttttttcctcttattttccatcatat 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 ctctctcgctctgtctttcttctttctctttttcttttttcctcttattttccatcatat 13
Query: 654 ttaatgtctatc 665
||||||||||||
Sbjct: 12 ttaatgtctatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1102
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1092
Effective search space: 752388
Effective search space used: 752388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_k11.g1 MSMg01no233_k11.g1 CHROMAT_FILE:
MSMg01no233_k11.g1 PHD_FILE: MSMg01no233_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:24 2005
(292 letters)
>mm_chr5_47315945_47316636
Length = 692
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Plus
Query: 1 acgaaggtgcgtaagtgggaattgtaaacgtagcaacaggcaggccagattcaaggtgtg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgaaggtgcataagtgggaattgtaaacgtagcaacaggcaggccagattcaaggtgtg 260
Query: 61 gaggaatagaaaacgacatgtaagtgaagggacattaggaaacagtcagtgcactgtgac 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 gaggaatagaaaacgacatgtaagtgaagggacattaggaaacaatcagtgcactgtgac 320
Query: 121 acttggcaataatctcccggacacagcaatgtcaccacagctgccaagactgagtgactt 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttggcaataatctcccggatacagcaatgtcaccacagctgccaagactgagtgactt 380
Query: 181 ctcatctgacacactggttccatgtttatgactttgctatgacatataatccacctttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatctgacacactggttccatgtttatgactttgctatgacatataatccacctttga 440
Query: 241 gtttttcagtatgtagtgttttactgcaatttatttttaacctgtttcca 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttttcagtatgtagtgttttactgcaatttatttttaacctgtttcca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
