Query= MSMg01no233_k12.b1 MSMg01no233_k12.b1 CHROMAT_FILE:
MSMg01no233_k12.b1 PHD_FILE: MSMg01no233_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:24 2005
(324 letters)
>mm_chr5_47468121_47468848
Length = 728
Score = 588 bits (304), Expect = e-172
Identities = 318/324 (98%), Gaps = 4/324 (1%)
Strand = Plus / Minus
Query: 5 gaattc-aatcattcatgagacatatcatcatctcctattactttgtggatatctcaata 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcaaatcattcatgagacatatcatcatctcctattactttgtggatatctcaata 469
Query: 64 gttatcattttaggtaaaatattattttacaactaagccattttttccttttatgatact 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gttataattttaggtaaaatattattttacaactaagccattttttccttttatgatact 409
Query: 124 tgtcatttcacagaactccttctacccaagatcatgcacattttctcctatattttatat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgtcatttcacagaactccttctacccaagatcatgcacattttctcctatattttatat 349
Query: 184 aaataagttttac---ttttatctctcttggctctttggtcgctggtgcattatcttgat 240
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 348 aaataagttttactttttttatctctcttggctctttggtcactggtgcattatcttgat 289
Query: 241 tcagttttgagattctacatgagacttgggttgacagtttctctcccctccccttagttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcagttttgagattctacatgagacttgggttgacagtttctctcccctccccttagttc 229
Query: 301 tcagttttcacagggattgataca 324
||||||||||||||||||||||||
Sbjct: 228 tcagttttcacagggattgataca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 728
Length adjustment: 9
Effective length of query: 315
Effective length of database: 719
Effective search space: 226485
Effective search space used: 226485
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_k12.g1 MSMg01no233_k12.g1 CHROMAT_FILE:
MSMg01no233_k12.g1 PHD_FILE: MSMg01no233_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:24 2005
(244 letters)
>mm_chr5_47316253_47316896
Length = 644
Score = 418 bits (216), Expect = e-121
Identities = 237/244 (97%)
Strand = Plus / Plus
Query: 1 ttctttaatgtatatccatatatatattaatgtccagcctatgctgaatgctgtgagtcc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttctttaatgtatatccatatatatattaatgtccagtctatgctgaatgctgtgagtcc 260
Query: 61 tggagaattttatctaaattatattccctaaggattcctagcacagtttatgattaaaac 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tggagaattttatctaaattatattccctaaggattcctagtacagtttatgattaaaac 320
Query: 121 aagagatatttattcacctacctccaatcatttttttaatttctgtttcttggtaacaat 180
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 321 aagagatatttattcacctacctccaatcattttttaaatttatgtttcttggtaacaat 380
Query: 181 tctatgtaaagaataggtagtttggtgtttgagggccatatgttatctcccacctgctca 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 381 tctatgtaaagaataggtagtttggcatttgagggccatatgttatctcccacctgttca 440
Query: 241 ttta 244
||||
Sbjct: 441 ttta 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
