BAC Information

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BAC

Clone NameMSMg01-234M17
Chromosome5 (Build37)
Map Location 19,294,793 - 19,295,069
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234M17.T7 (MSMg01no234_m17.b1)MSMg01-234M17.TJ (MSMg01no234_m17.g1)
ACCAG400574AG400575
length732708
length of high quality
(start - end)
248 (437 - 684)277 (84 - 360)
definitionCHROMAT_FILE: MSMg01no234_m17.b1 PHD_FILE: MSMg01no234_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:53 2005CHROMAT_FILE: MSMg01no234_m17.g1 PHD_FILE: MSMg01no234_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTTTTCGCATGAACTTCTTTATATATATATATTTTTAATT
AGGTATTTTCCTCATTTATTTTCCCCATGCTATCCCAAAAGTCCCCCATA
CCCTCCCCCGCCACTCCCCTACCCACCCACTCCCACCTTTTGGCCCTGGC
GTTCCCCAACTTCAGGAATTCTTATAGGATCATCATTAAGACTTAAGAGG
TCAACAATTTATATAGCATCACTACAAGACAGTACATCTTCGTGGATCTG
CAGAGATCTGCTCCAAAGGGGTGTGCTATTACTTAGTGATTGTTATATAT
GTTTAATAGTAACTTGTAAAAGCACCACCACCCGCTGAACCTGTTGCAGA
TTATATAACAATGTGAAGCAGGCCATCTCAAGAAGATTGCTTGCTAGTTA
TTAGCTTGTCCCATTATGCCTCCTGACAGACTTTCTGCTTGAGGTGGGCT
CTATAAGTACCCTCTCCCTACTTTTGAGCATTTCATCTAAGGTCCCTCCC
TTTGAGTCCTGAGAGTCTTTCACCTCCCAAGGCTCTAGTGCATTCTGGAG
GATTGCCCCAACCTCTTACCTTATGAGGTTGCCTGCTTCCTTTCTTTTTA
CTGGACTTCAGGGCTTCAGTCCTTTTCCCTCACCCAATATCAGATCAGGG
TCCCCTTTTCTCCCTCTCCCATCCACTTTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGATTACATAGAG
GGACCATGTCTCAAAAAATAAAGACATATAAAAAGATTTTTTAGTCATTT
TTGAATGAGGAGTCTTCTATTCTCTCTTTGACTGGTCTTGGTAAGTTCTG
TACTAGGCTTACTCAACTAAACTATAAGTGGTTTTGAGCATGGGATATTT
TAGATAACTTGATTATCTAAAGATCCATTAAGGGAAAGCTGTATTCTCCC
AATCAAAAGAATTGAGTTTACCTCTAGGTGGAAATCTAGCATTCCACTTG
GACTGGTCAATTTTTTGTTCCCCCACACACCATTGGGGAAGTCTGATACA
GCATAAGTTATGCTAAAAAGTTGGAGGAAAAATTTTCTCCCTTTAGTAAA
TATTGTACTTTCTTGCCAGGAAAGCTGTTCCTGGCAACTCTTATGGAGTT
GGAGCCATGTGGCCAATAACTTAGGTCTGCCCATATTTTTTTTTTTTAAG
AATTACTAAAAAAACACAAGTTTTTCATTTTCTTCTATTTCTTTTTCCTT
ATTTTGGATTCTGACCAAAGATTGGCATGCCTTCCTGGACACTCTGACCT
TCCCCATTCTCTTTCTAGAAGTTATGCTCCAAGTCTTCCCACCTGCGGGC
ATTTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_m17.g1 MSMg01no234_m17.g1 CHROMAT_FILE:
MSMg01no234_m17.g1 PHD_FILE: MSMg01no234_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:53 2005
         (277 letters)



>mm_chr5_19294558_19295234
          Length = 677

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctggattacatagagggaccatgtctcaaaaaataaagacatataaaaagatttttta 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 512 gcctggattacatagagggaccatgtctcaaaaaataaagagatataaaaagatttttta 453

                                                                       
Query: 61  gtcatttttgaatgaggagtcttctattctctctttgactggtcttggtaagttctgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtcatttttgaatgaggagtcttctattctctctttgactggtcttggtaagttctgtac 393

                                                                       
Query: 121 taggcttactcaactaaactataagtggttttgagcatgggatattttagataacttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taggcttactcaactaaactataagtggttttgagcatgggatattttagataacttgat 333

                                                                       
Query: 181 tatctaaagatccattaagggaaagctgtattctcccaatcaaaagaattgagtttacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tatctaaagatccattaagggaaagctgtattctcccaatcaaaagaattgagtttacct 273

                                                
Query: 241 ctaggtggaaatctagcattccacttggactggtcaa 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctaggtggaaatctagcattccacttggactggtcaa 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)