BAC Information

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BAC

Clone NameMSMg01-235E06
Chromosome5 (Build37)
Map Location 61,620,054 - 61,620,369
singlet/doubletsinglet
Overlap geneLOC666597
Upstream geneCbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235E06.T7 (MSMg01no235_e06.b1)MSMg01-235E06.TJ (MSMg01no235_e06.g1)
ACCAG400894AG400895
length747748
length of high quality
(start - end)
320 (45 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no235_e06.b1 PHD_FILE: MSMg01no235_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:33 2005CHROMAT_FILE: MSMg01no235_e06.g1 PHD_FILE: MSMg01no235_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAATCAACATTTTTTCCAGATATCCAACTATGTCAATGAAATAAA
GATACACTTTTCAGTTTATCATGTACAATAAAAGTGTGCTAACAGTAGAG
GGAAGAACTCGAAGGGCATTCCTTGTGAGATTTTAGAACTGAGGTGAATT
AACTGATATAAATACTACTTTGTATTCACTTTGGGTTTTTGAAATTTTTA
ATGTTACATGTGCCAAATTCACATCCATTCCCTCAGGTCAAGCATATAAT
AATTTCTTTTTATGCTATGAAAGAAAAATATATTGAACTATAAATATAAT
CAACTTAAACTAACGTACCACACACCTACTCAGCTATCTTAAAATTATAG
AATTACACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTACAG
AGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAG
ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT
CACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAG
CATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAA
TGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGG
ATCAAGGAACTTCACATAAAGTCAGAGACACTGAAACTTATAGAGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTAGCTCTGTACCACATTT
ATTTATAGGGGTGTTTGTTTCTCTGGAGTCTAACTTTATAAGTTCTTTGT
ATATATATTGGATATTAGCCCTCTATCAGATGGAGGGTTAGTAAAAAAAA
AAAATCTTTTCCCAATCTGTTGTTTGCCATTTTGTCCTATTGACAGTGCC
TTACAGAGGCTTTGCAATTTTATGAGGTTCCATTTGTCAATTATTGATAT
TAGGGCATATGCCATCGGTGTTCTGTTCAGGAAAAATTTCCCTGACCCTA
TGTGTTTGAGGCTCTTCCTCAAATTCTCTTCTATTAGTTTCAGTGTACCT
GGTTTTATGTTGAGGTCCTTGATCCACTTAGGCTTGAGCTTTGTACAAGG
AGATACGAATGGACTGATTTGCATTCTTCTACATGATGACCTCCAGTTGA
ACCAGCACCATTTGTTGAAGATGCTGTCTTTTTTCCACTGGATGGTTTTA
GCTCCCTTCTCAAATGTCAAGTGACAGTGGGTATATGGGTTTATTTCTGG
GTCTTCATTCTATTCTAATGATCTACCTGCCTTTTTCTGTACCAATATCA
TACAGGTTTTACCACTATTGCTCTGTAATACAGTTTAAGACCAGGGAAGA
TGATTTCCGCACAAGTTCCTTTATTGTTGAGAAAAGGTTTCAGAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_e06.b1 MSMg01no235_e06.b1 CHROMAT_FILE:
MSMg01no235_e06.b1 PHD_FILE: MSMg01no235_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:33 2005
         (320 letters)



>mm_chr5_61619850_61620569
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaatcaacattttttccagatatccaactatgtcaatgaaataaagatacact 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcctaatcaacatttattccagatatccaactatgtcaatgaaataaagatacact 461

                                                                       
Query: 65  tttcagtttatcatgtacaataaaagtgtgctaacagtagagggaagaactcgaagggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttcagtttatcatgtacaataaaagtgtgctaacagtagagggaagaactcgaagggca 401

                                                                       
Query: 125 ttccttgtgagattttagaactgaggtgaattaactgatataaatactactttgtattca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttccttgtgagattttagaactgaggtgaattaactgatataaatactactttgtattca 341

                                                                       
Query: 185 ctttgggtttttgaaatttttaatgttacatgtgccaaattcacatccattccctcaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctttgggtttttgaaatttttaatgttacatgtgccaaattcacatccattccctcaggt 281

                                                                       
Query: 245 caagcatataataatttctttttatgctatgaaagaaaaatatattgaactataaatata 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cgagcatataataatttctttttatgctatgaaagaaaaatatattgaactataaatata 221

                           
Query: 305 atcaacttaaactaac 320
           ||| ||||||||||||
Sbjct: 220 atccacttaaactaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)