Query= MSMg01no235_l02.b1 MSMg01no235_l02.b1 CHROMAT_FILE:
MSMg01no235_l02.b1 PHD_FILE: MSMg01no235_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:05 2005
(211 letters)
>mm_chr5_134014826_134015436
Length = 611
Score = 373 bits (193), Expect = e-108
Identities = 202/205 (98%)
Strand = Plus / Minus
Query: 5 gaattcctgcaggctgcccatgatgagagcacagaactactcagtgagacccgtgttttc 64
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 gaattcctgcaggctgcgcatgatgagagcacagaactactcagtgagacccatgttttc 310
Query: 65 cgactgcttcacagttaactagagggcagctgatgtggtttgtacttgggtggcttctca 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctactgcttcacagttaactagagggcagctgatgtggtttgtacttgggtggcttctca 250
Query: 125 aagacaaaatagtgcttggttaaactgatgccatttttcttcccagtgtgtgtgtgtgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagacaaaatagtgcttggttaaactgatgccatttttcttcccagtgtgtgtgtgtgtg 190
Query: 185 tgtgtgtgtgtgtgtgtgtgtgtgt 209
|||||||||||||||||||||||||
Sbjct: 189 tgtgtgtgtgtgtgtgtgtgtgtgt 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space: 121604
Effective search space used: 121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no235_l02.g1 MSMg01no235_l02.g1 CHROMAT_FILE:
MSMg01no235_l02.g1 PHD_FILE: MSMg01no235_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:05 2005
(493 letters)
>mm_chr5_133845883_133846774
Length = 892
Score = 833 bits (431), Expect = 0.0
Identities = 467/493 (94%), Gaps = 25/493 (5%)
Strand = Plus / Plus
Query: 1 attacctctaaatgtctgtgacagaatgcttctatcatgcattaggcatcacagcaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 attacctctaaatgtctgtgacagaatgcttctatcatgcattaggcatca-agcaggaa 259
Query: 61 gacaatatccgtcatgtagggtcatgtaggagaggaacatggaaataagtgtttcttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacaatatccgtcatgtagggtcatgtaggagaggaacatggaaataagtgtttcttagt 319
Query: 121 cttgttttctgtttctatgataaaatactctgacaaatgcaacttaagggggaaggggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttgttttctgtttctatgataaaatactctgacaaatgcaacttaagggggaaggggtt 379
Query: 181 tatttggctatacaggctgtaaccctgtatacccagaacatggtagaaatagactcactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatttggctatacaggctgtaaccctgtatacccagaacatggtagaaatagactcactg 439
Query: 241 atggatatttaaactatctgaaacacaaaaacttatatctcagttactttttctgtacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atggatatttaaactatctgaaacacaaaaacttatatctcagttactttttctgtacct 499
Query: 301 gtgtaaaatacctagataagatatatatctatctatatctgtatctatatctatatctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgtaaaatacctagataagatatatatctatctatatctgtatctatatctat------ 553
Query: 361 gtctatgtctatgtctatgtctatgtctatgtctatgtctatgtctatgtctatatctat 420
|||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 554 gtctatgtctatgtctatgtctatgtctat----at--------------ctatatctat 595
Query: 421 atctatgtctatatctatataatcctgtatagccaaatcataactccatcattgctaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 596 atctatgtctatatctatataatcctgtatagccaaatcataactccatcattgccaggg 655
Query: 481 agtcacaaagata 493
|||||||||||||
Sbjct: 656 agtcacaaagata 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
