Query= MSMg01no235_p03.b1 MSMg01no235_p03.b1 CHROMAT_FILE:
MSMg01no235_p03.b1 PHD_FILE: MSMg01no235_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:23 2005
(506 letters)
>mm_chr5_92721345_92722249
Length = 905
Score = 808 bits (418), Expect = 0.0
Identities = 474/502 (94%), Gaps = 17/502 (3%)
Strand = Plus / Plus
Query: 5 gaattctcaccaataaccgaaattacaaagcctcccggggaaaccacttttctagacacc 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaccaataaatgaaattacaaagcctcccggggaaaccacttttctagacacc 264
Query: 65 acacgcacagcataactgtccatcttagtacattataaacactgactgtccccaagtatg 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacgcacagcataactgtctatcttagtacattataaacactgactgtccccaagtatg 324
Query: 125 ttttacataccctacggtcatgacttccccagagttcttgtcagtaacaaaattgttggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttacataccctacggtcatgacttccccagagttcttgtcagtaacaaaattgttggc 384
Query: 185 caccgtcacaagcaacgactgaataatctgagttggaaacaaaagagctgagtcaggcgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccgtcacaagcaacgactgaataatctgagttggaaacaaaagagctgagtcaggcgg 444
Query: 245 aggtccctgcttcccctgcactcggactgcggtgcagcagcagccttctgccttagggtg 304
||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct: 445 aggtccctgcttcccctgcactcagactgtggtgcagcagcaaccttctgccttagggtg 504
Query: 305 cgcgctgagaaccaaagctaaggagctaaggaagacagaaaagagtgcgcccccagctca 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 cgcgctgagaaccaaagctaaggagctaaggaagacagaaacgagtgcgcccccagctca 564
Query: 365 gtcttctggcctatagatatggtaaagtttaccatcctttaacagcgttttctcttttac 424
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 gtcttccgggctatagatatggtaaagtttacc-tcctttaacagcgttttctcttttac 623
Query: 425 attgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagaaaata 484
|||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 624 attgtgtgtgtgtgtg--------------agagagagagagagagagagagagaa--ta 667
Query: 485 cttatacctgagcatatgcatg 506
|||||||| ||||| |||||||
Sbjct: 668 cttatacccgagcacatgcatg 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space: 443920
Effective search space used: 443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_p03.g1 MSMg01no235_p03.g1 CHROMAT_FILE:
MSMg01no235_p03.g1 PHD_FILE: MSMg01no235_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:23 2005
(551 letters)
>mm_chr5_92851145_92852095
Length = 951
Score = 961 bits (497), Expect = 0.0
Identities = 530/541 (97%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 1 atggcaaacctgcatgaagtctcttatgaaatacatcttgttgactttagtaatgcattc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 540 atggcaaacctgcatgaagtctcttatgaaatacatcttgttggctttagtaatgcattc 481
Query: 61 tgaaaagtgaccttgtatttcaggttaattcctgtaccaatggtgggtttcaaagaattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgaaaagtgaccttgtatttcaggttaattcctgtaccaatggtgggtttcaaagaattg 421
Query: 121 cttcgaagactgaaggttcaagatcagatgactaagcagcatcagaccagactagatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cttcgaagactgaaggttcaagatcagatgactaagcagcatcagaccagactagatgta 361
Query: 181 agagttcactttttgttctctgtcttgagggtggaaaagaaaagagaatcagagagagac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agagttcactttttgttctctgtcttgagggtggaaaagaaaagagaatcagagagagat 301
Query: 241 ttttatggtgtgtagggagcttgtccgctgcaggtggcagctctgtgcgtctgccttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttttatggtgtgtagggagcttgtccgctgcaggtggcagctctgtgcgtctgccttctt 241
Query: 301 tatggcggtag-catcctccagcccacatacacaccttttgctcccaatttatgtgtatg 359
||||| ||| | ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 240 tatggtggt-gccatcctccagcccacatacacaccttttgtttttaatttatgtgtatg 182
Query: 360 gctttacctacatagatgtctatacaccgcctattgtgcagtacccttggtagacataag 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttttacctacatagatgtctatacaccgcctattgtgcagtacccttggtagacataag 122
Query: 420 agtgtatcagataccgtggaactggaattaaatctgggtgtgagtgtagaattgaacctt 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 agtgtatcagataccgtggaactggaattaaatctgggtgtgagtgtggaattgaacctt 62
Query: 480 agtcctttggaagaactgccagtgctcttaacatctgaactaactctccagccccagaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtcctttggaagaactgccagtgctcttaacatctgaactaactctccagccccagaaa 2
Query: 540 t 540
|
Sbjct: 1 t 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
