Query= MSMg01no235_p09.b1 MSMg01no235_p09.b1 CHROMAT_FILE:
MSMg01no235_p09.b1 PHD_FILE: MSMg01no235_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:24 2005
(635 letters)
>mm_chr5_35146671_35147705
Length = 1035
Score = 1135 bits (587), Expect = 0.0
Identities = 620/631 (98%)
Strand = Plus / Plus
Query: 5 gaattccacatgtacccttgatacaactctctgaattccacatacagttccactccctat 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatggacatttgatacaactctctgaattccacatacagttccactccctat 264
Query: 65 aaggtcctgccaagctaaggatatattttatgctgcaaggctgcttttgatctgagtgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggtcctgccaagctaaggatatattttatgctgcaaggctgcttttgatctgagtgtg 324
Query: 125 cacagcctgtgtttctcagtctcgcttatgtcacctttcccttttactgctaggtttaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagcctgtgtttctcagtctcgcttatgtcacctttcccttttactgctaggtttaca 384
Query: 185 acagggcactcctgtaggtctccctttttcaccagcatgtactgtgggtctctgagcagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagggcactcctgtaggtctccctttttcaccagcatgtactgtgggtctctgagcagt 444
Query: 245 ggactggctgttgagcccctttggttgtctttgcaggtctgctggttcccatggaagaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggactggctgttgagcccctttggttgtctttgcaggtctgctggttcccatggaagaag 504
Query: 305 agcactccactctcctgatcctcggtgtgttgctcacattgaggtgtctagtgcccttgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcactccactctcctgatcctcggtgtgttgctcacattgaggtgtctagtgcccttgc 564
Query: 365 tccaccaccacgtcaaggacacaagtctaaaaggcagctttggggtgacacggaaagaaa 424
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tccagcagcaggtcaaggacacaagtctaaaaggcagctttggggtgacacggaaagaaa 624
Query: 425 tggaagtctctccttctacagagcagcttgttcaggtaagggtgaatagtgataagttca 484
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 tggaagtctctccttctacagagcagcttgtccaggtaagggtgaatagtgataagttca 684
Query: 485 tgtgggacatgaaagaagtatcatctttccgcaagtgctgggacagaggaagtagctggg 544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtgggacatgaaagaagtagcatctttccgcaagtgctgggacagaggaagtagctggg 744
Query: 545 agacgatgtgttccttttgctgctgaggagtcaggagatgtgtgtccacagaccaggtat 604
||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 745 agatggtgtgttccttttgctgctgaggagtcaggagatgtgtgtccacagatcaggtat 804
Query: 605 gagttgtttgcttaaaacagggagcacacat 635
|||||||||||||||||||||||||||||||
Sbjct: 805 gagttgtttgcttaaaacagggagcacacat 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_p09.g1 MSMg01no235_p09.g1 CHROMAT_FILE:
MSMg01no235_p09.g1 PHD_FILE: MSMg01no235_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:24 2005
(595 letters)
>mm_chr5_35302543_35303531
Length = 989
Score = 1077 bits (557), Expect = 0.0
Identities = 583/595 (97%), Gaps = 6/595 (1%)
Strand = Plus / Minus
Query: 1 caggacagttagggctatacagggaaatcttgtcttgaaaaataaaccaaaataaaacca 60
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 832 caggacagttagggctatacagggaaatcttgtcttgaaaaacaaacaaaaataaaacca 773
Query: 61 acaacaaaatcttgctatcaactcacaagccacacaccctatacacaagcctcctacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 acaacaaaatcttgctatcaactcacaagccacacaccctatacacaagcctcctacagg 713
Query: 121 aggtttccctccccttccctcctctcttcccgtatacatgcagcagcctccttaggaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aggtttccctccccttccctcctctcttcccgtatacatgcagcagcctccttagg---- 657
Query: 181 tcagaccgaaggcctcaagctgtccccaccaccctttcctagtcacaaggctttctgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 --agaccgaaggcctcaagctgtccccaccaccctttcctagtcacaaggctttctgata 599
Query: 241 ccatttctgctacaaagcatcccatccacctgggtcccctctcaagtcagtgttcctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ccatttctgctacaaagcatcccatccacctgggtcccctctcaagtcagtgttcctttg 539
Query: 301 gtcccctcacggtgctcctagacctctgaaacctggcccccccttcccttctggctccag 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 538 gtcccctcacggtgctcctagacctctgaaacctggccctcccttcccttctggctccag 479
Query: 361 ctcatggctggcctccctcttgtgcagcctctccttttacacccttgctcctctaaggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctcatggctggcctccctcttgtgcagcctctccttttacacccttgctcctctaaggat 419
Query: 421 gggcccatctgtctcctcagccccaaggttatccactccgggcttttctacctgcttatc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 418 gggcccatctgtctcctcagccccaaggttatccactctgggcttttctacctgcttatc 359
Query: 481 tcctgcaagcaagcccaacaccacagccccagaggccaaacaccctcagggacagagcta 540
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 358 tcctgcaagcaagcccaataccacagccccagaggccaaacaccctcaaggacagagcta 299
Query: 541 cctctccagatgttagagggcccctaacagagcaccccaaaaccctgtcaaggac 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cctctccagatgttagagggcccctaacagagcaccccaaaaccctgtcaaggac 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 989
Length adjustment: 10
Effective length of query: 585
Effective length of database: 979
Effective search space: 572715
Effective search space used: 572715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
