Query= MSMg01no235_p18.b1 MSMg01no235_p18.b1 CHROMAT_FILE:
MSMg01no235_p18.b1 PHD_FILE: MSMg01no235_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:26 2005
(686 letters)
>mm_chr5_31309195_31310278
Length = 1084
Score = 928 bits (480), Expect = 0.0
Identities = 562/598 (93%), Gaps = 25/598 (4%)
Strand = Plus / Minus
Query: 5 gaattctaggacagtccagtctacacagaggaaccctgtcctggaaaaccaaaaacaaca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattctaggacagtcaagtctacacagaggaaccctgtcctggaaaaccaaaaacaaca 530
Query: 65 acaacagcaaacaacccagaaacaaaacaaaacaaaacaaaaaagcaaacaa----aagc 120
||||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||
Sbjct: 529 acaacagcaaacaacccagaaac-aaac-aaac-aaacaaaaaa-caaacaaaaacaaga 474
Query: 121 aaaaacaaaagaa-----cccccaaaaaaaacccaaaaacaaaaaacccccaaacattta 175
||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 473 aaaaacaaaagaacctcccccccaaaaaaa---caaaaacaaaaaacccccaaacattta 417
Query: 176 aagtatgaaattttaaaatatgttttcataagagcatcaacccaagaccggagagagtat 235
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aagtatgaaaatttaaaatatgttttcataagagcatcaacccaagaccggagagagtat 357
Query: 236 aaatgaggagatgcatcttgtcttggtgctacatgctctatgcccagtattcaaggagac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaatgaggagatgcatcttgtcttggtgctacatgctctatgcccagtattcaaggagac 297
Query: 296 tgaagcaaagtgatcgtgaatttgaagctgatctgagctactcagtgaatttcagcctaa 355
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgaag-taagtgatcatgaatttgaagctgatctgagctactcagtgaatttcagcctaa 238
Query: 356 cctgggctacataatcaagactctcaaccagaaaaagaaaagtataggataacccaaatc 415
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 237 cctgggctacataatcaagactctcaaccagaaaaag-agagtataggataacccaaatc 179
Query: 416 atgagcatagatgtacatatctcttttggggga-gggggagtacctcactcatctgtagc 474
||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 178 atgagcatagatgtacatatctcttttgggggaggggggaatacctcactcatttgtagc 119
Query: 475 ccaggcttgttaggaacttagtatatagccaagactagcctgcctggctatgtgataatt 534
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 118 ccaggcttgttaggaacttagtatatagccaagtctagcttgcctggctatgtgataatt 59
Query: 535 ctcc-----t-gcctcttgagtaccggaataaaccactgtgcttggcttgaagtcata 586
|||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 58 ctcccgccatagcctcttgagtacaggaataaaccactgtgcttggcttgaagtcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1084
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1074
Effective search space: 726024
Effective search space used: 726024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_p18.g1 MSMg01no235_p18.g1 CHROMAT_FILE:
MSMg01no235_p18.g1 PHD_FILE: MSMg01no235_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:26 2005
(650 letters)
>mm_chr5_31289321_31290370
Length = 1050
Score = 1210 bits (626), Expect = 0.0
Identities = 644/650 (99%)
Strand = Plus / Plus
Query: 1 agcatccttctcccttctgttcctctcaggatgcttgtggaccacaactgctttcttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatccttctcccttctgttcctctcaggatgcttgtggaccacaactgctttcttgat 260
Query: 61 tgacctgtactggggagatccagggcgaggccctgggaataaggactcacaagattttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacctgtactggggagatccagggcgaggccctgggaataaggactcacaagattttat 320
Query: 121 taccagtcacaaaatggatttgtgctgcaccctatgagtccctcaggaacacactaactt 180
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactagtcacgaaatggatttgtgctgcaccctatgagtccctcaggaacacactaactt 380
Query: 181 gggagggagtcggccttttttgtgtcagtttgtaagtagcaacagcagccaagagggcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagggagtcggccttttttgtgtcagtttgtaagtagcaacagcagccaagagggcat 440
Query: 241 gctaggatggagggcagggctgactgggactatcctggcctgggagtgggtatgaaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaggatggagggcagggctgactgggactatcctggcctgggagtgggtatgaaactg 500
Query: 301 atgccgttggcagtcgggtagccattccctgtgtcctattgaaaactttctcactcagct 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtgttggcagtcgggtagccattccctgtgtcctattgaaaactttctcactcagct 560
Query: 361 gtccccaacacccacatccttttgttatatatacattcaatctggtgtctgtgtgtgtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccccaacacccacatccttttgttatatatacattcaatctggtgtctgtgtgtgtgc 620
Query: 421 atgtgtatagacacatgtgtatacatgtggcagtggccatcagaggataacctgtaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgtatagacacatgtgtatacatgtggcagtggccatcagaggataacctgtaggag 680
Query: 481 tctgttctcttccaccatataggacccggggattgaactcagattgtcaggcttggcagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgttctcttccaccatataggacccggggattgaactcagattgtcaggcttggcagc 740
Query: 541 aatcacctttaccttctgagccctttcccctgccccttctctccttattttcgtcaccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatcacctttaccttctgagccctttcccctgccccttctctccttattttcgtcaccat 800
Query: 601 tccgttactttccacatccagatattgatttatccaaccccatgagttct 650
||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 801 tccattactttccacatccagatattgatttatccaacaccatgagttct 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
