Query= MSMg01no236_b15.b1 MSMg01no236_b15.b1 CHROMAT_FILE:
MSMg01no236_b15.b1 PHD_FILE: MSMg01no236_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:35 2005
(685 letters)
>mm_chr5_19772632_19773716
Length = 1085
Score = 1253 bits (648), Expect = 0.0
Identities = 673/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Plus
Query: 6 aatatttaagaccttacagactagatcacatgataagattctatggagctttgtgagaaa 65
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aatatttaagaccatagagactagatcacatgataagattctatggagctttgtgagaaa 263
Query: 66 tttctgccctgctccccacagtgtctggacttcatgttaccctggcaggaatggaaggtc 125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tttctgccctgctccccacagtgtctggacttcacgttaccctggcaggaatggaaggtc 323
Query: 126 ctactgctcttcatctctcccaatgcttgctcttgtcagtggtttgtattttagactct- 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctactgctcttcatctctcccaatgcttgctcttgtcagtggtttgtattttagactctg 383
Query: 185 -aaatgcagtgtcaccaaggcaaacattaaactgagttttgccatttttacaagggaggc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaatgcagtgtcaccaaggcaaacattaaactgagttttgccatttttacaagggaggc 443
Query: 244 ccccttaaaactggactcaaatagaagaaaatgttctttgcagactattctccacaaggt 303
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcttaaaactggactcaaatagaagaaaatgttctttgcagactattctccacaaggt 503
Query: 304 cagggccatgaccttggtgtaagtaatgaaaacagatcagacaaacaacattctgtacat 363
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 caggaccatgaccttggtgtaagtaatgaaaacagatcagacaaacaacattctttacat 563
Query: 364 tgttgagatgtgttaattacatcaatgccctgctcggtgagatgatgctcacactattct 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttgagacgtgttaattacatcaatgccctgctcggtgagatgatgctcacactattct 623
Query: 424 caggaggtcagggtacctgtggagagtgctgagcagggcagcttgagatacatggtacac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caggaggtcagggtacctgtggagagtgctgagcagggcagcttgagatacatggtacac 683
Query: 484 agataagtcagacatgcttatccatatgctcaggtgtatacctactacctcagtcaaaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agataagtcagacatgcttatccatatgctcaggtgtatacctactacctcagtcaaaac 743
Query: 544 agttcaaagaaaagacctgagcaagaggaagtaccaaaactttcaaataattgaacacat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agttcaaagaaaagacctgagcaagaggaagtaccaaaactttcaaataattgaacacat 803
Query: 604 gttatgttaagtaaattccgtttttgtgtcttcagaatgctaaacaaaatggccctcttc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gttatgttaagtaaattccgtttttgtgtcttcagaatgctaaacaaaatggccctcttc 863
Query: 664 tcagaaactattttactagtat 685
||||||||||||||||||||||
Sbjct: 864 tcagaaactattttactagtat 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_b15.g1 MSMg01no236_b15.g1 CHROMAT_FILE:
MSMg01no236_b15.g1 PHD_FILE: MSMg01no236_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:35 2005
(655 letters)
>mm_chr5_19791049_19792103
Length = 1055
Score = 1226 bits (634), Expect = 0.0
Identities = 651/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Minus
Query: 1 ttttaaacagggtacaggtaaagtggctggccccaaatcttgtttgtgcccataccaagg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 704 ttttaaacagggtacaggtaaagtggctggccccaaatcttgtttgtgtttataccaagg 645
Query: 61 gccaggctggtcaagcatctgcctttgcttaatcagcccactgagggctggcgatgaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gccaggctggtcaagcatctgcctttgcttaatcagcccactgagggctggcgatgaagg 585
Query: 121 ctccgctttagaaatgtgtccccctttataggttcctgtcagaaaggtaatcgtaaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctccgctttagaaatgtgtccccctttataggttcctgtcagaaaggtaatcgtaaccca 525
Query: 181 attaaataattcccaaggaagccaagagcaaagcggtgaacacaaatgaggtgaaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 attaaataattcccaaggaagccaagagcaaagcggtgaacacaaatgaggtgaaaggca 465
Query: 241 cttggatcgctcctgcctgagcctgccagctctgtcacagggaaccctgaataggggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 464 cttggatcgctcctgcctgagcctgccagctctgtcacagggaaccctgaagaggggaca 405
Query: 301 ttttaatgaggagacagtccttgcaacagaccttcaccctcagctgctgattatacccgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttttaatgaggagacagtccttgcaacagaccttcaccctcagctgctgattatacccgc 345
Query: 361 agccatagcctggcaaatggcagaggagctgtagggaatttgaagaacttgattttcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agccatagcctggcaaatggcagaggagctgtagggaatttgaagaacttgattttcctg 285
Query: 421 atgtgggaactcaaatgagccccgtgggcataaagctaagaatgagtaaacaaaaatatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atgtgggaactcaaatgagccccgtgggcataaagctaagaatgagtaaacaaaaatatc 225
Query: 481 caaaagggattaataaagaaatggaaagaaaaagaaaaagaaaaagaaaaa---aaacag 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 224 caaaagggattaataaagaaatggaaagaaaaagaaaaagaaaaagaaaaagaaaaacag 165
Query: 538 agaaattcattactgtcaagcctcttttcagtgtgttcatcattagatcacgtgatttga 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 agaaattcattactgtcaagcctcttttcagtgtgttcatcattagatcacgtgatttga 105
Query: 598 gttttccctggtgagccccatctggtaacacaggttgctcttagcatttgctccactg 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gttttccctggtgagccccatctggtaacacaggttgctcttagcatttgctccactg 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
