Query= MSMg01no236_f06.b1 MSMg01no236_f06.b1 CHROMAT_FILE:
MSMg01no236_f06.b1 PHD_FILE: MSMg01no236_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
(557 letters)
>mm_chr5_144071394_144072350
Length = 957
Score = 978 bits (506), Expect = 0.0
Identities = 544/562 (96%), Gaps = 10/562 (1%)
Strand = Plus / Plus
Query: 5 gaattctccattcccaccgcgagagacctgtgctcttgaacccgtttgcctgcacgtatg 64
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctccattcccacag-gagagacctgtgctcttgaacccgtttgcctgcacgtatg 255
Query: 65 tatgtgcatcacaggcccgcatctccgcgcttctaagagcagaaggtgcctccaacctga 124
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 256 tatgtgcatcacaggcacgcatctccgcgcttctaagagcagaaggcgcctccaacctga 315
Query: 125 aagtggcacaggttaagcagtagaaccggtaagatggggacaaacacatggccatggggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aagtggcacaggttaagcagtagaaccggtaagatggggacaaacacatggccatggggc 375
Query: 185 tgggatggaacaggaaacagacaaggttcccaaagactctcaaactgctggct------- 237
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 tgggatggaacaggaaatagacaaggttcccaaagactctcaaactgctggctgagctgc 435
Query: 238 --gagctgccagagccagacaagacactacctgtcagcccccagggcatccagggcagag 295
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 436 cagagctgccagagccagacaagacactacctgtcagcccccagggcagccagggcagag 495
Query: 296 gacagagggaggagactgacccctgtgctcaaaagcaggctcactccacagaaagcagca 355
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 496 gacagagggaggagactgacccctgagcacaaaagcaggctcactccacagaaagcagca 555
Query: 356 caaacaccttccctttgtgggaaaaccctgagcctcaggcataagacaccgcaggggcca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caaacaccttccctttgtgggaaaaccctgagcctcaggcataagacaccgcaggggcca 615
Query: 416 ttgctgacgtgaagccccggcttcttcacctattctctccatcacagacacattcctggg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgctgacgtgaagccccggcttcttcacctattctctccatcacagacacattcctggg 675
Query: 476 acagcatcaacgagcagggttttctgcgcaagtccttccacatctgtgtcaactctggcc 535
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acagcatcaacgagcagggctttctgcgcaagtccttccacatctgtgtcaactctggcc 735
Query: 536 cctacttcctggctgttcttcc 557
||||||||||||||||||||||
Sbjct: 736 cctacttcctggctgttcttcc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_f06.g1 MSMg01no236_f06.g1 CHROMAT_FILE:
MSMg01no236_f06.g1 PHD_FILE: MSMg01no236_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
(567 letters)
>mm_chr5_144117092_144118058
Length = 967
Score = 833 bits (431), Expect = 0.0
Identities = 461/471 (97%)
Strand = Plus / Minus
Query: 1 ttgccacctgcagaattcttcacaacagggcagggtaaaaactgtcgaaccctggggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 471 ttgccacctgcagaattcttcacaacagggcagggtaaaaactgtcgaagtctggggctg 412
Query: 61 gcaggggtggcactgtccatcctgagcctacgggtaaaggacccctagtccagctctgcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 411 gcaggggtggcactgtccatcctgagcctacgggtaaaggacccctagtccatctctgcc 352
Query: 121 caaggctggtgtgaaccatcagggacatttcctctgtcacctatcagagcgttgcactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 caaggctggtgtgaaccatcagggacatttcctctgtcacctatcagagcgttgcactcc 292
Query: 181 tgcagtgcattgggaacaagcagatgacataacctcatctgaagagtagtctgaagttag 240
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgcagtgcattgggaacaggtagatgacataacctcatctgaagagtagtctgaagttag 232
Query: 241 ttcatgtaccacgctaactgcctggagtctcagctcagttagagcgcccataaagcatgc 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttcatgtaccacattaactgcctggagtctcagctcagttagagcgcccataaagcatgc 172
Query: 301 atgagaccttggcgccatcctcaggacctaataaatcaggcatagcagcacatagctgca 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atgagaccttggtgccatcctcaggacctaataaatcaggcatagcagcacatagctgca 112
Query: 361 atcctagcacctgatagatggaggcaggaggatcacaagtttcaggccagcctggactac 420
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 111 atcctagcacctgagagatggaggcaggaggatcacaagtttaaggccagcctggactac 52
Query: 421 gtagtgacttcagcctaggttgcatgagaccctgtttcaaataaaataaat 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gtagtgacttcagcctaggttgcatgagaccctgtttcaaataaaataaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
