Query= MSMg01no236_f07.b1 MSMg01no236_f07.b1 CHROMAT_FILE:
MSMg01no236_f07.b1 PHD_FILE: MSMg01no236_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
(589 letters)
>mm_chr5_144071422_144072410
Length = 989
Score = 1040 bits (538), Expect = 0.0
Identities = 579/602 (96%), Gaps = 17/602 (2%)
Strand = Plus / Plus
Query: 1 gacctgtgctcttgaacccgtttgcctgcacgtatgtatgtgcatctcagccacgcatct 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 192 gacctgtgctcttgaacccgtttgcctgcacgtatgtatgtgcatcacaggcacgcatct 251
Query: 61 ccgcgcttctaagagcagaaggtgcctccaacctgaaagtggcacaggttaagcagtaga 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccgcgcttctaagagcagaaggcgcctccaacctgaaagtggcacaggttaagcagtaga 311
Query: 121 accggtaagatggggacaaacacatggccatggggctgggatggaacaggaaacagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 312 accggtaagatggggacaaacacatggccatggggctgggatggaacaggaaatagacaa 371
Query: 181 ggttcccaaagactctcaaactgctggctgagctgccagagc---------cagacaaga 231
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 372 ggttcccaaagactctcaaactgctggctgagctgccagagctgccagagccagacaaga 431
Query: 232 cactacctgtcagccccctgttttg----ccagggcagaggacagagggaggagactgac 287
|||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 432 cactacctgtcagcccccag----ggcagccagggcagaggacagagggaggagactgac 487
Query: 288 ccctgagcacaaaagcaggctcactccacagaaagcagcacaaacaccttccctttgtgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccctgagcacaaaagcaggctcactccacagaaagcagcacaaacaccttccctttgtgg 547
Query: 348 gaaaaccctgagcctcaggcataagacaccgcaggggccattgctgacgtgaagccccgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaaaaccctgagcctcaggcataagacaccgcaggggccattgctgacgtgaagccccgg 607
Query: 408 cttcttcacctattctctccatcacagacacattcctgggacagcatcaacgagcagggc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttcttcacctattctctccatcacagacacattcctgggacagcatcaacgagcagggc 667
Query: 468 tttctgcgcaagtccttccacatctgtgtcaactctggcccctacttcctggctgttctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttctgcgcaagtccttccacatctgtgtcaactctggcccctacttcctggctgttctt 727
Query: 528 ccagaagacccatgtttaatttcccagtacccacttgtagctcacacctgtctataatta 587
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccagaagacccaggtttaatttcccagtacccacttgtagctcacacctgtctataatta 787
Query: 588 ta 589
||
Sbjct: 788 ta 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_f07.g1 MSMg01no236_f07.g1 CHROMAT_FILE:
MSMg01no236_f07.g1 PHD_FILE: MSMg01no236_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:52 2005
(288 letters)
>mm_chr5_144117077_144117764
Length = 688
Score = 491 bits (254), Expect = e-143
Identities = 278/286 (97%)
Strand = Plus / Minus
Query: 1 ttgccacctgcagaattcttcacaacagggcagggtaaaaactgtcgaaccctggggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 486 ttgccacctgcagaattcttcacaacagggcagggtaaaaactgtcgaagtctggggctg 427
Query: 61 gcaggggtggcactgtccatcctgagcctacgggtaaaggacccctagtccagctctgcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 426 gcaggggtggcactgtccatcctgagcctacgggtaaaggacccctagtccatctctgcc 367
Query: 121 caaggctggtgtgaaccatcagggacatttcctctgtcacctatcatagcgttgcactcc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 366 caaggctggtgtgaaccatcagggacatttcctctgtcacctatcagagcgttgcactcc 307
Query: 181 tgcagtgcattgggaacaagcagatgacataacctcatctgaagagtagtctgaagttag 240
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgcagtgcattgggaacaggtagatgacataacctcatctgaagagtagtctgaagttag 247
Query: 241 ttcatgtaccacgctaactgcctggagtctcagctcagttagagcg 286
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 246 ttcatgtaccacattaactgcctggagtctcagctcagttagagcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
