Query= MSMg01no236_k09.b1 MSMg01no236_k09.b1 CHROMAT_FILE:
MSMg01no236_k09.b1 PHD_FILE: MSMg01no236_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
(648 letters)
>mm_chr5_103901817_103902864
Length = 1048
Score = 1152 bits (596), Expect = 0.0
Identities = 632/644 (98%), Gaps = 1/644 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtattacaagtagctttatcaaattcttcagttttggacagtaagctctacat 64
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctgtattataagtagctttatcaaattcttcagttttggacagtaagttctacat 264
Query: 65 agatttttgccccctaccctaatagaacatagaaccaagaggtctgtaaattctctccat 124
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatttttgtcagctaccctaatagaacatagaaccaagaggtctgtaaattctctccat 324
Query: 125 gaactgcttgaactagagcaggaatgtgcacatgagatgattttattctgaatttcttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaactgcttgaactagagcaggaatgtgcacatgagatgattttattctgaatttcttaa 384
Query: 185 ttagtccctgttgcctttgctgactgttcccttataccatgtttttagctcgattacaat 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ttagtccctgttgcctttgctgactgttcccttataccatgtttttagcccgattacaat 444
Query: 245 catttacctttttattttatttatttttggagacaagagtcttgctatgtaacccaagat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catttacctttttattttatttatttttggagacaagagtcttgctatgtaacccaagat 504
Query: 305 gtccttaaactactaactagcccaggttgtcctcaggctcataacgtgcctgccctccag 364
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtccttaaactactaaatagcccaggttgtcctcaggctcataacgtgcctgccctccag 564
Query: 365 cctcagcatcctgagtgctgggattacagtcgcacagtccaaggtggaattctaaaggaa 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctcagcatcctgagtgc-gggattacagtcgcacagtccaaggtggaattctaaaggaa 623
Query: 425 atggcagggcccaagaagaaagaagggctgttaaattgtgataggtttttagtttgagag 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggcagggcccaggaagaaagaagggctgttaaattgtgataggtttttagtttgagag 683
Query: 485 aacactgaaatatgcttgaagttgtttctttccataccaagtttctaactgcacccctgg 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aacactgaaatgtgcttgaagttgtttctttccataccaagtttctaactgcacccctgg 743
Query: 545 ctgattgagcttgaacagcaactcctcccgtggaatgttagtagtctccagaaagaacca 604
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 744 ctggttgagcttgaacagcaactcctcccgcggaatgttagtagtctccagaaagaacca 803
Query: 605 cgttgactgctggagttggttcatatcaggtttactttttcata 648
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cgttgactgctggagttggttcatatcaggtttactttttcata 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_k09.g1 MSMg01no236_k09.g1 CHROMAT_FILE:
MSMg01no236_k09.g1 PHD_FILE: MSMg01no236_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
(234 letters)
>mm_chr5_104049844_104050477
Length = 634
Score = 443 bits (229), Expect = e-129
Identities = 232/233 (99%)
Strand = Plus / Minus
Query: 1 atgctctctgtccttcctggaggcagcacagggaagcagccatctctgtttaggaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgctctctgtccttcctggaggcagcacagggaagcagccatctctgtttaggaaagga 374
Query: 61 gaatcaagctgtgacctgtcctaggatggcttctgtggatgcggtcttatagcaaactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 373 gaatcaagctgtgacctgtcctaggatggcttctgtggatgcggtcttacagcaaactgg 314
Query: 121 tgtccattcagctaaccagatcatttcttcttttatggagaaacagtttagtttggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtccattcagctaaccagatcatttcttcttttatggagaaacagtttagtttggagaa 254
Query: 181 ttggagttcttgatttcatgggcttaaaaatcaaaatatcattgaataactta 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttggagttcttgatttcatgggcttaaaaatcaaaatatcattgaataactta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
