Query= MSMg01no236_m16.b1 MSMg01no236_m16.b1 CHROMAT_FILE:
MSMg01no236_m16.b1 PHD_FILE: MSMg01no236_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:26 2005
(311 letters)
>mm_chr5_41079576_41080288
Length = 713
Score = 532 bits (275), Expect = e-155
Identities = 294/301 (97%), Gaps = 2/301 (0%)
Strand = Plus / Minus
Query: 5 gaattctaacattacgagtaatgtgacttgactcctattctaaaagtgctgtgcaaagaa 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattctaacaggaggagtaatgtgacttgactcctattctaaaagtgctgtgcaaagaa 405
Query: 65 gac--atagtgactcaagcatcaagacaaaagtttaaaaatgccatgaaagcaaaaatgg 122
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gacagatagtgactaaagcatcaagacaaaagtttaaaaatgccatgaaagcaaaaatgg 345
Query: 123 aaaaacaaggcaaagttatggacattcgttatgttctaatagttccagcagaggatttaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaaaacaaggcaaagttatggacattcgttatgttctaatagttccagcagaggatttaa 285
Query: 183 gtgtttcatcatacttaagattacaccatgttagactttgcaactaaaaatatagggtct 242
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 284 gtgtttcatcatacttaagattacaccatgttagactttgcaactagaaatatagggtct 225
Query: 243 taaaattctttcattacaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 taaaattctttcattacaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 165
Query: 303 t 303
|
Sbjct: 164 t 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 713
Length adjustment: 9
Effective length of query: 302
Effective length of database: 704
Effective search space: 212608
Effective search space used: 212608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_m16.g1 MSMg01no236_m16.g1 CHROMAT_FILE:
MSMg01no236_m16.g1 PHD_FILE: MSMg01no236_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:26 2005
(363 letters)
>mm_chr5_40943704_40944466
Length = 763
Score = 619 bits (320), Expect = 0.0
Identities = 353/364 (96%), Gaps = 2/364 (0%)
Strand = Plus / Plus
Query: 1 accttttttgaaaacataattctaaaaccagattttccctctcctgtggctatcagatga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttttctgaaaacataattctaaaaccagattttccctctcctgtggctatcagatga 260
Query: 61 ctgttttatatagtaggtctctcagatttcaaggttattctagatcaaggaagaaatgaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ctgttttatatagtaggtctctcagatttcaaggttattctagatcaaggaaaaaatgaa 320
Query: 121 gcaccactgggtaagattgtcatgtactaacgttcactgatctaaccc-ccaaatcactt 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 321 gcaccactgggtaagattgtcatgtactaacgttcactgatctaaccctccaa-tcactt 379
Query: 180 aaagcctttgttaagttccactgttatgaagactaactctgatacttcaagttagtattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaagcctttgttaagttccactgttatgaagactaactctgatacttcaagttagtattt 439
Query: 240 gttcctctcctcccccttttctgtagttgagaaaataatttctgaaggttcttaccacac 299
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 440 gttcctctcctcccccttttctgtaattgagaaaataatttctgaagtttcttaccacac 499
Query: 300 tttcttccatatcttccagtcctagctcattttatacactgctttttgtgccataagctt 359
|||||||| ||||||||||| ||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 500 tttcttccctatcttccagttctagctcattttacacactgttttttatgccataagctt 559
Query: 360 gtca 363
||||
Sbjct: 560 gtca 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
