Query= MSMg01no237_a08.b1 MSMg01no237_a08.b1 CHROMAT_FILE:
MSMg01no237_a08.b1 PHD_FILE: MSMg01no237_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:43 2005
(316 letters)
>mm_chr5_119169697_119170412
Length = 716
Score = 499 bits (258), Expect = e-146
Identities = 304/336 (90%), Gaps = 28/336 (8%)
Strand = Plus / Minus
Query: 4 ggaattctctatcctcctaaaactgagagaactggcatgcacccccacacctggcttcgg 63
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 515 ggaattctctatcctcctaaaacggagagaactggcatgcacccccacacctggcttcag 456
Query: 64 gtggtttttcg------------ccctttttctttcatcaactttaaaaacatttaaaga 111
||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 455 gtggtttttcgtttttttttttt---tttttcttttatcaactttaaaaacatttagaga 399
Query: 112 atgtctctattggagtttatttatttcccatattactgcgttatataaagacactctctt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgtctctattggagtttatttatttcccatattactgcgttatataaagacactctctt 339
Query: 172 tcaagtgtagcgccagttttacagcagctgggtaatgtattccacgggggcagagagac- 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcaagtgtagcgccagttttacagcagctgggtaatgtattccacgggggcagagagaca 279
Query: 231 ------------agcacgtgctctctagggacctttactcccagcacactctctctccat 278
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gagctgacttaaagcacgtgctctctagggacctttactcccagcacactctctctccat 219
Query: 279 ccaacctccgaggttagagctacttctcttctctag 314
||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccaacctccgaggttagagctacttctcttctctag 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_a08.g1 MSMg01no237_a08.g1 CHROMAT_FILE:
MSMg01no237_a08.g1 PHD_FILE: MSMg01no237_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:44 2005
(598 letters)
>mm_chr5_118987111_118988107
Length = 997
Score = 1033 bits (534), Expect = 0.0
Identities = 574/598 (95%), Gaps = 18/598 (3%)
Strand = Plus / Plus
Query: 1 agtaggtagcccaggctagcttagaatttgaggcactagtccctgccccaatgttggttc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agtaggtagcccaggctagcttagaatttgaggcactagtccctgcctcaatgttggttc 260
Query: 61 acacccacagcctctcctgaagtggcaagatgtcatcagttcatttattcatgttccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 acacccacagcctctcctgaagtggcaagatgtcatcagttcatttattcacgttccctt 320
Query: 121 ccttttcccttgatcatcttaacttgtcttttggtgccagcggtgttgggagctgtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttttcccttgatcatcttaacttgtcttttggtgccagcggtgttgggagctgtttct 380
Query: 181 gacttcttctggctacacagactactttcacagacagtagggctgtgccctgagaactta 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttcttctggctacacagactaccttcacagacagtagggctgtgccctgagaactta 440
Query: 241 ctgcttccaagcacagtgagaagaaaccggaaagtgcttggtgcagtctgctgcctttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcttccaagcacagtgagaagaaaccggaaagtgcttggtgcagtctgctgcctttga 500
Query: 301 gggggaagaagttgtctcctgcagttcgagacctccgatcctcctgcttcagcaaagcct 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gggggaagaagttgtctcctgcagttcgagacctccgatcttcctgcttcagcaaagcct 560
Query: 361 ccttcattcataagggttgctgggagcaggcagatctgtctgggggggtggaagagctgt 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ccttcattcataagggttgctgggagcaggcagatctgtctgggggg-tggaagagctgt 619
Query: 421 cttcctcaactgtgctccaccttattttttgagacagagtctctcgctgcaatatcagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttcctcaactgtgctccaccttattttttgagacagagtctctcgctgcaatatcagtt 679
Query: 481 cagagagaatatcatttcagctggcccaacaggacagcaagctcctggaaccctctcgtg 540
||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 cag-----------------ctggcccagcaggacagcaagctcctggaaccctctcgtg 722
Query: 541 tctactttcctagccctgattgtttacagttggagagactgaactgaaattctaatgc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 723 tctactttcctagccctgattgtttacagttggagagactgaactgaaattctcatgc 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space: 580356
Effective search space used: 580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
