BAC Information

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BAC

Clone NameMSMg01-237B16
Chromosome5 (Build37)
Map Location 13,059,269 - 13,059,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845
Downstream geneLOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237B16.T7 (MSMg01no237_b16.b1)MSMg01-237B16.TJ (MSMg01no237_b16.g1)
ACCAG402155AG402156
length725696
length of high quality
(start - end)
579 (76 - 654)306 (45 - 350)
definitionCHROMAT_FILE: MSMg01no237_b16.b1 PHD_FILE: MSMg01no237_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:50 2005CHROMAT_FILE: MSMg01no237_b16.g1 PHD_FILE: MSMg01no237_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGCATTCAATTGAGAAGATAGAAT
AAATCACCAGTCACGGAAAACTAACAGCATGCAGTACATTTGGACTTAAA
AATACTGAAAATCGCCCAGCTACAAGTGGAAAAACCATCATAATGCCAAG
AGTGCAAATGTTTTGAGAAGACAAGAATTCTAATTAGCTGGGATGGGAAT
CACAGCATGAGGCTAAATCATTGGTTTGATGCTAAGAGTGGTTATACTGA
ACTGTGTCATTAAGATTGCATAGCACCATTGTGATAAAACAACTGTTAAA
CATATTACCCACCTCAGAATTTCCTAAACAGCACTTTACAGTTTATAGAG
AGATGTAAAAATATAGATATATATTGTAGTGTTCCACTTTGTTGGACTCC
TTAATGAATGTAACAGTTTTTATGCTTAGTAGAAAATCTGGATTGATCAT
TTAAAGTCTGTTTTCCTTTTAGATTGTGGAGTAGGGGGTTCACTTTCAGA
CACCTAATAAATCACGATCTAACATCTGAGAAAGAGACTTATTGCCACAT
TGCTAAATCAAGGGGAAAAAAAAAACTCCTGGATGGTGAGCCTGCTTTGC
TAAGTTCTGAGCACAGGACAGTAATGAGCCAGGAAGCTGTATTCTTCAGT
AATAATATGTTACACTCCATTAATG
GACTCCTATNTGCAGAGGATCCGCGGAATTCCAGTCATGTCTCCATTGGT
GATGAACAGCAGTGTGGAAGTGTAAGCCAAATAAATCCTCTCCTCCCCAC
CTTGCTTCTTTGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGA
CAAGTATATTGACATCAGACATGAAGACACGGAGCTTAGAATTTACCATC
CTCATTTTCTGTCACTTTTGATCTGAATTTCCTCACCCTGCTCCCTTTGC
TCTGTTTTAGAAACCATAATATATATCATGTGCCATTATATATCATGTGC
CAATATATGCAAGAAGTATATAATCAGTTTTTTTCATTTTGTTTTTAGAG
AGGATTATCATTAAGAGATTGAGAATCCCTGAGGAGACGTTGACCTTTGA
ACTTTTAAACAGTATTAATACTGTGATAGAGTATGAAATTTTAAGGTTGG
ATAAGATTTAGCTACAAGCCTATGAGGGCCAGGGAGTGCAATTTGTTGGT
TTGAATAAAAATAACCCCAGAGTAGCATTATAGGGAGTGACACTATTAGA
ATGTACGGCCTTGTTGGAAGAAGTATGTCACAGTAAGGTGGGATTTGAGT
TTCAGATGCTCAGGTGAGGCCCAGTGTTACTCACTCTTCCTGATGTCTGC
CCATCTAGATAGAACTCTCAGCTACCTCTCCAGCACCATGTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_b16.b1 MSMg01no237_b16.b1 CHROMAT_FILE:
MSMg01no237_b16.b1 PHD_FILE: MSMg01no237_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:50 2005
         (579 letters)



>mm_chr5_13059069_13060048
          Length = 980

 Score = 1083 bits (560), Expect = 0.0
 Identities = 575/580 (99%), Gaps = 1/580 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcattcaattgagaagatagaataaatcaccagtcacggaaaactaacagcatgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tggcattcaattgagaagatagaataaatcaccagtcacggaaaactaacagcatgcagt 721

                                                                       
Query: 61  acatttggacttaaaaatactgaaaatcgcccagctacaagtggaaaaaccatcataatg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 720 acatttggacttaaaaatactgaaaatggcccagctacaagtggaaaaaccatcataatg 661

                                                                       
Query: 121 ccaagagtgcaaatgttttgagaagacaagaattctaattagctgggatgggaatcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccaagagtgcaaatgttttgagaagacaagaattctaattagctgggatgggaatcacag 601

                                                                       
Query: 181 catgaggctaaatcattggtttgatgctaagagtggttatactgaactgtgtcattaaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 600 catgaggctaaatcattggtttgatgctaagagtggttatactgaactgtatcattaaga 541

                                                                       
Query: 241 ttgcatagcaccattgtgataaaacaactgttaaacatattacccacctcagaatttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgcatagcaccattgtgataaaacaactgttaaacatattacccacctcagaatttcct 481

                                                                       
Query: 301 aaacagcactttacagtttatagagagatgtaaaaatatagatatatattgtagtgttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaacagcactttacagtttatagagagatgtaaaaatatagatatatattgtagtgttcc 421

                                                                       
Query: 361 actttgttggactccttaatgaatgtaacagtttttatgcttagtagaaaatctggattg 420
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 420 actttgttggactccttaatgaatttagcagtttttatgcttagtagaaaatctggattg 361

                                                                       
Query: 421 atcatttaaagtctgttttccttttagattgtggagtagggggttcactttcagacacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atcatttaaagtctgttttccttttagattgtggagtagggggttcactttcagacacct 301

                                                                       
Query: 481 aataaatcacgatctaacatctgagaaagagacttattgccacattgctaaatcaagggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aataaatcacgatctaacatctgagaaagagacttattgccacattgctaaatcaagggg 241

                                                   
Query: 541 -aaaaaaaaaactcctggatggtgagcctgctttgctaag 579
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaaaaaaaaaactcctggatggtgagcctgctttgctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)