Query= MSMg01no237_d06.b1 MSMg01no237_d06.b1 CHROMAT_FILE:
MSMg01no237_d06.b1 PHD_FILE: MSMg01no237_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:58 2005
(583 letters)
>mm_chr5_123578775_123579757
Length = 983
Score = 1065 bits (551), Expect = 0.0
Identities = 575/583 (98%)
Strand = Plus / Minus
Query: 1 atcattggcgagatgagtcagctctacctgtggctgcctcttgagctaatgtgggggaaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 783 atcattggcgagatgagtcagctctacctgtggctgcctcttgggctaatgtgggggaaa 724
Query: 61 atgacggtcagtaactgtctagactagagaaaaggggaggtttaagggggtgagatcaat 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 723 atgacggtcagtaactgtctagactagagaaaaggggaggcttaagggggtgagatcaat 664
Query: 121 gactgagttagagatgaatctagaaagtgccatagaaagttctagaactggggagagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gactgagttagagatgaatctagaaagtgccatagaaagttctagaactggggagagcag 604
Query: 181 cctgcctttccagtcagctgtgatcagaattacggaacaggaatgaccccccaaagttga 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 603 cctgcctttccagtcagctgtgatcagaattacgggacaggaatgaccccccaaagttga 544
Query: 241 attttcttctgaacccaaaacggaacgctaggtccatgcccacagggcccatatggaagg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attttcttctaaacccaaaacggaacgctaggtccatgcccacagggcccatatggaagg 484
Query: 301 cccccgtggctacttgtccccatcctgcggaagtagtcagagtcaccccagccctttact 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cccctgtggctacttgtccccatcctgcggaagtagtcagagtcaccccagccctttact 424
Query: 361 gagcactgggtgctcaagaggtagagggggtggggccacagcactcacagctccagtagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gagcactgggtgctcaagaggtagagggggtggggccacagcactcacagctccagtagc 364
Query: 421 ctcccctgagccctgacatcttcagacaggaagctgtggtgaggctggggaggttcctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctcccctgagccctgacatcttcagacaggaagctgtggtgaggctggggaggttcctgg 304
Query: 481 gcagaggggtggtgtcacggtggggttgtttggacaccatccaaaggctctcatctagta 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcagaggggtggtgtcatggtggggttgtttggacaccatccaaaggctctcatctagta 244
Query: 541 ccggagggacacagaggtttagggagctatgtgcgagagaatc 583
|||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 243 ccggagggacacagaggtttggggagctatgtgcaagagaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_d06.g1 MSMg01no237_d06.g1 CHROMAT_FILE:
MSMg01no237_d06.g1 PHD_FILE: MSMg01no237_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:58 2005
(681 letters)
>mm_chr5_123555581_123556662
Length = 1082
Score = 1280 bits (662), Expect = 0.0
Identities = 674/678 (99%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggacgccaccttcatcttctatcagctctgcctacctctgagcagagccctgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggacgccaccttcatcttctatcagctctgcctacctctgagcagagccctgg 264
Query: 65 aacccagtcaagatccgcgacttggggactggagagaatggcccagcagttaggagcatt 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacccagtcaagatccgtgacttggggactggagagaatggcccagcagttaggagcatt 324
Query: 125 ttctactcttgcagaggacccatgtttggttcccaacatctacagctggcacgattgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctactcttgcagaggacccatgtttggttcccaacatctacagctggcacgattgtgg 384
Query: 185 tgggcaaaggctcttatcacaagcctgaccacctgacctgttcctgggactcgcaaagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggcaaaggctcttatcacaagcctgaccacctgacctgttcctgggactcgcaaagtg 444
Query: 245 gcaggagaaaaccaaccataaagccataaaggttttgtttttccctgccctccatacact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaggagaaaaccaaccataaagccataaaggttttgtttttccctgccctccatacact 504
Query: 305 ctcacctacgataaataaatacacataacatatttttaaaagatccgtaatatgctaaga 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 ctcacctacgataaataaatacacataagatatttttaaaagatccgtaatatgctaaga 564
Query: 365 gcagtagtacacacctttactcccagcactgcggaggcagaggcagagacaggtggatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagtagtacacacctttactcccagcactgcggaggcagaggcagagacaggtggatct 624
Query: 425 cttgtgaattccaggtctgccatggaggcaaaggcaggtggatctcttgtgaattccagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttgtgaattccaggtctgccatggaggcaaaggcaggtggatctcttgtgaattccagg 684
Query: 485 tctgccatggaggcagaggcaggtggatctcttgtgaattccaggtctgccagggctaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgccatggaggcagaggcaggtggatctcttgtgaattccaggtctgccagggctaca 744
Query: 545 catagtgagatcctgtctcaaaaaagaaaaaaaaaaatccacaacttgccaccataggac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catagtgagatcctgtctcaaaaaagaaaaaaaaaaatccacaacttgccaccataggac 804
Query: 605 ctgttttctaaaagtcccttaacttcctattcccttccctacttcctttttaaa-ttatt 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 805 ctgttttctaaaagtcccttaacttcctattcccttccctacttcctttttaaaattatt 864
Query: 664 cctttgcctcaggcaggg 681
||||| ||||||||||||
Sbjct: 865 cctttacctcaggcaggg 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
