BAC Information

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BAC

Clone NameMSMg01-237F05
Chromosome5 (Build37)
Map Location 56,555,919 - 56,710,944
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237F05.T7 (MSMg01no237_f05.b1)MSMg01-237F05.TJ (MSMg01no237_f05.g1)
ACCAG402304AG402305
length737735
length of high quality
(start - end)
519 (125 - 643)511 (74 - 584)
definitionCHROMAT_FILE: MSMg01no237_f05.b1 PHD_FILE: MSMg01no237_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:08 2005CHROMAT_FILE: MSMg01no237_f05.g1 PHD_FILE: MSMg01no237_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,555,919 - 56,556,436)(56,710,458 - 56,710,944)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGGAATTCCTGCCCATCCTTCTGCCACATCCCCTAAACACACCT
TAACATCAAGGATAGGTATGTCCTCTAGGTTTAAAGGAAAAAAATATATT
CCAAGAAAATAGACCTGAAAAGAAGGGAGGTGTAACTCTTTAAATATGTG
GCAAAATAGATTTCAACACAAAACTTATTAGAAGCAAAGGATGCTATATG
CTCATCAAAATAAAAATCTGCTCAGAAAACTTAGGAATTTTTAACATCTG
TGCACAGAGTCACCAAATTCATAAACAGAACACTAATACAGCTTTAATCA
CATCATCTATGCACCTATCTCACAGAAGTGACCTTAAAAATACTACAAGG
AAACTCTTACAGCTGACAAGCTCTTTCAGAAAGTAGCACTGTCAAAAATC
AAGTCAGCAAACCCAGTAGCTTTGTATATACAAGTGACAAATGTCCTCAG
AAATAAACAGGGGAGCAACACCGTTCATACACCGATTTTTACCTTAGCCT
TGAGAGTAGCAAGAGCCCATTTACTTTTTTTTTTTTCTCAAAAGTGATCA
AAATGCTCAGTTTGCGGTGGAGAAAATGGTTTCTTGGGTTGTTTTTATAA
ATTCAGTGCTCCAGATTGTTCATCAAAGCTGCATCATTTGGAATCTAATC
CATCTTTGCTGTAAAATGATGAACCCATCAGACTTGT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGACATAGGAATCCGTTTCTCTGAC
AAGCAATTTAACTATGACAAGAAAAGTAGCATTTCCACCAGTTAGAACTG
CTCCTATCTGAGTCGATCTGCTTAGGGCTTCAAGCTGCTAGTAGTCATAG
AGGAACACAGGAGTGAAGGCATCAAGTGTTCCAACCTCCCTGAAAATGTA
AAAGATAAATATAGGTGAGGAGAGTTGATGCCCAGTTTTATACAAGTCTG
GCAACTCAGTCACTTCACCAGTATAAAATCACTCCTCACCCCCAAAATCT
TTCTCTTCACATTTTTAAAAATTTTATTTATGATTAGATTAGTTATAATT
TTTAAATTTTTCTGAGATAATTTACATAACGATGTAAGATTGCTTGCCTA
TGTATTTGATTGATAGCTTTAAAGTTTGGCAAGTAAAATGAGAGTTGTAT
CTGAAGGTGTTGTTTTATTAGTAAGAACTGACGCTATGTGTTTCTTCTTC
ATCTCTGGGTGGCTACAGACAGATATACTTTCAGTTTTCCAAAGTGAGAA
TGTTGAACACTTTAGATCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTC
TCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTG
TCTCTGTCTCTGCCTCTCTCTCTCTCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_f05.b1 MSMg01no237_f05.b1 CHROMAT_FILE:
MSMg01no237_f05.b1 PHD_FILE: MSMg01no237_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:08 2005
         (519 letters)



>mm_chr5_56555718_56556636
          Length = 919

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   taggtttaaaggaaaaaaatatattccaagaaaatagacctgaaaagaagggaggtgtaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taggtttaaaggaaaaaaatatattccaagaaaatagacctgaaaagaagggaggtgtaa 261

                                                                       
Query: 62  ctctttaaatatgtggcaaaatagatttcaacacaaaacttattagaagcaaaggatgct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctctttaaatatgtggcaaaatagatttcaacacaaaacttattagaagcaaaggatgct 321

                                                                       
Query: 122 atatgctcatcaaaataaaaatctgctcagaaaacttaggaatttttaacatctgtgcac 181
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atatgctcaacaaaataaaaatctgctcagaaaacttaggaatttttaacatctgtgcac 381

                                                                       
Query: 182 agagtcaccaaattcataaacagaacactaatacagctttaatcacatcatctatgcacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agagtcaccaaattcataaacagaacactaatacagctttaatcacatcatctatgcacc 441

                                                                       
Query: 242 tatctcacagaagtgaccttaaaaatactacaaggaaactcttacagctgacaagctctt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatctcacagaagtgaccttaaaaatactacaaggaaactcttacagctgacaagctctt 501

                                                                       
Query: 302 tcagaaagtagcactgtcaaaaatcaagtcagcaaacccagtagctttgtatatacaagt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcagaaagtagcactgtcaaaaatcaagtcagcaaacccagtagctttgtatatacaagt 561

                                                                       
Query: 362 gacaaatgtcctcagaaataaacaggggagcaacaccgttcatacaccgatttttacctt 421
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 562 gacaaatgtcctcagaaataaacaggggagcaacaccgttcacacaccgatttttacctt 621

                                                                       
Query: 422 agccttgagagtagcaagagcccatttacttttttttttttctcaaaagtgatcaaaatg 481
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agccttgagagtagcaggagcccatttacttttttttttttctcaaaagtgatcaaaatg 681

                                                 
Query: 482 ctcagtttgcggtggagaaaatggtttcttgggttgtt 519
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctcagtttgcggtggagaaaatggtttcttgggttgtt 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no237_f05.g1 MSMg01no237_f05.g1 CHROMAT_FILE:
MSMg01no237_f05.g1 PHD_FILE: MSMg01no237_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:08 2005
         (511 letters)



>mm_chr5_56710458_56711368
          Length = 911

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagacataggaatccgtttctctgacaagcaatttaactatgacaagaaaagtagcatt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atagacataggaatctgtttctctgacaagcaatttaactatgacaagaaaagtagcatt 428

                                                                       
Query: 61  tccaccagttagaactgctcctatctgagtcgatctgcttagggcttcaagctgctagta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tccaccagttagaactactcctatctgagtcgatctgcttagggcttcaagctgctagta 368

                                                                       
Query: 121 gtcatagaggaacacaggagtgaaggcatcaagtgttccaacctccctgaaaatgtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtcatagaggaacacaggagtgaaggcatcaagtgttccaacctccctgaaaatgtaaaa 308

                                                                       
Query: 181 gataaatataggtgaggagagttgatgcccagttttatacaagtctggcaactcagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gataaatataggtgaggagagttgatgcccagttttatacaagtctggcaactcagtcac 248

                                                                       
Query: 241 ttcaccagtataaaatcactcctcacccccaaaatctttctcttcacatttttaaaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcaccagtataaaatcactcctcacccccaaaatctttctcttcacatttttaaaaatt 188

                                                                       
Query: 301 ttatttatgattagattagttataatttttaaatttttctgagataatttacataacgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttatttatgattagattagttataatttttaaatttttctgagataatttacataacgat 128

                                                                       
Query: 361 gtaagattgcttgcctatgtatttgattgatagctttaaagtttggcaagtaaaatgaga 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gtaagattgcttgcctaggtatttgattgatagctttaaagtttggcaagtaaaatgaga 68

                                                                       
Query: 421 gttgtatctgaaggtgttgttttattagtaagaactgacgctatgtgtttcttcttcatc 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  gttgtatctgaaggtgttattttattagtaagaactgacgctatgtgtttcttcttcatc 8

                  
Query: 481 tctgggt 487
           |||||||
Sbjct: 7   tctgggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)