BAC Information

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BAC

Clone NameMSMg01-237H16
Chromosome5 (Build37)
Map Location 64,733,910 - 64,734,144
singlet/doubletsinglet
Overlap geneTbc1d1
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Ppia-ps22
Downstream geneLOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237H16.T7 (MSMg01no237_h16.b1)MSMg01-237H16.TJ (MSMg01no237_h16.g1)
ACCAG402414AG402415
length772694
length of high quality
(start - end)
87 (501 - 587)238 (101 - 338)
definitionCHROMAT_FILE: MSMg01no237_h16.b1 PHD_FILE: MSMg01no237_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:19 2005CHROMAT_FILE: MSMg01no237_h16.g1 PHD_FILE: MSMg01no237_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGNNNCCCCAANAAAACCNNCCCNGCCAAACCCCCCCCCCACAAANNC
CCCAATGAAGTGGGTAGCCCGGNGGNCGCCGGGATGCTGCAANNGANNNG
ANNNNANNGANGGTTACAAGGAGGAAGGNNGANNANGGAGNNNNNNAAGN
GGANGAGGNNAGNNNNGGANAGGCCCGNAGAAGNAAANGNANNNNNGNGG
NNAGGGGNGNAGAAGNAGAANNNNGGNNNGAGAGGAAANNNNNNGANNAG
NANNGAGNNAANNNAGGGNAGAANANNNAAGGAGAAGGGGNAGAGGANNA
TTTTATAGGTAGANNGTGATAGAGNNTTTTGGTTGTGTGNTNNATAGGAG
ATTNTGGAAGGGNNTTTTTTTTTTTTTTANNNANGANNAAGNAGNANNNG
AAANGNNTTTTTTTTTTTCCCCCCCCCCCCTTTTAAATAGTCATCAGNCA
GGTGTGGTGGCTTGCTTCTTTAATCAAAAAAAAATGAGGCAGACGCCAGG
TGGATCTATGTGAGTTTGAGGCCACTTAGTCTACATAGGTAGAGACTCCC
CCAATCCCTCTGGTTTTCCAAGAAAGGGTTTCTCTGCATAGCTCCGGTTG
TACTGAAAATCATTTTGTAGACTAGACTGGCCTCGATATCAGAGATATGC
CTGCCTCTGCTTCTCAGGTGCTAAGATTAGAGGCGTGGGCCATCTTTGTT
TTTTTGTATAGATCCTAGCTCAAAAAAAAAGAGGCAAAGTTATTAAGTAA
GCTAACGGAGGATGAGGTTTTG
CTCACTATTTCGAGAGGATCCGCGGAATTCTTAATATTTCCCTTGGGTTC
TCACTGTCTCAGTGTAATTGTTTTGTGCCCCAGGAATGGTCCAAACCCCC
AGCAGACTGTCTGGTGGGGCAAGAGCCCTATTCCTTGAGTAGGGCTTGCC
TTGGCCAAGGGACTGAAGAATAAAGGGATGGCAATCAGGACCTTGTTCTT
ACCTACTTACAGATCACAAGTGACTGACTGATGCAGAAAGGCCTAAGATT
AAAGTCTGACTCCACAGTGGTACCTCAGAAAAGCACGATCCATGATTTAA
AGACCAAATGTTAGACACTGGGGGGCTGATAGGAACGTTTTCACTCCCCC
ACCGCCCAGCTTCTCTCCCTCTGAGCTGTCTAAAACCCAGGCCCTGAGCA
GAGTCACTCCACATCCCACAAGGAGCAGCCCTTGTCTTCTTTAGTCTGGC
TCCATATCAGATCCCACCTCAAACCTTCCACTCCTTCCTGCCTCTCCATT
TCTCCACACTTTTCAGAAAACTGTGTTGCCAGAGTTTTGGTGTTGAAAAG
AGCATTTTCTTCTGCTTGTCAAAGTAGGAATTATTCATTTCCTTATGCTC
AGTTTTTGTCAGATAGACATCCCGTCAGCTTATTACTGAAGCAATAAAGC
CCCAGGCAGGAAGCGTGGAGGGCAAAACCCCCAGTACAGCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_h16.g1 MSMg01no237_h16.g1 CHROMAT_FILE:
MSMg01no237_h16.g1 PHD_FILE: MSMg01no237_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:19 2005
         (238 letters)



>mm_chr5_64733710_64734347
          Length = 638

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagactgtctggtggggcaagagccctattccttgagtagggcttgccttggccaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 agcagactgtctggtggggcaagagccctattccttgagtagggcttcccttggccaagg 376

                                                                       
Query: 61  gactgaagaataaagggatggcaatcaggaccttgttcttacctacttacagatcacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gactgaagaataaagggatggcaatcaggaccttgttcttacctacttacagatcacaag 316

                                                                       
Query: 121 tgactgactgatgcagaaaggcctaagattaaagtctgactccacagtggtacctcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgactgactgatgcagaaaggcctaagattaaagtctgactccacagtggtacctcagaa 256

                                                                  
Query: 181 aagcacgatccatgatttaaagaccaaatgttagacactggggggctgataggaa 235
           |||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagcacgatccatgaactaaagaccaaatgttagacactggggggctgataggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)