BAC Information

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BAC

Clone NameMSMg01-237I01
Chromosome5 (Build37)
Map Location 87,828,559 - 87,828,752
singlet/doubletsinglet
Overlap geneLOC100039818
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237I01.T7 (MSMg01no237_i01.b1)MSMg01-237I01.TJ (MSMg01no237_i01.g1)
ACCAG402431AG402432
length713798
length of high quality
(start - end)
194 (99 - 292)284 (134 - 417)
definitionCHROMAT_FILE: MSMg01no237_i01.b1 PHD_FILE: MSMg01no237_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:21 2005CHROMAT_FILE: MSMg01no237_i01.g1 PHD_FILE: MSMg01no237_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTACCTTTTCAAACGGATCCGCGGAATTCAAAACTTTACAATTATTAACT
CTTCATGAAAAATCAATTTTGCTTTGGGATTCTAAGAATAGTAATACTGA
TCTGTGTATCTCTACTCAGTAAGGGCAGGAAAATTTGCACATAAAATTTA
ATTGAGCATTCTCGTTTTTGTAATTATCACTGAGATTGGTTACTTCCTCC
ATTTCTTAACTTTTTGTCTGCCTCACTCCCTCTGTGTTCTGTTGAAGCAT
AGATGACACATTTGATGTGTGCAAATGTATGTTTATGTGTACCTTTTTGA
GTTGGTGACATTGAGAAGACTATCTCAGATGTTTAATTGACATGTATTCC
CTGATAGAGACAGAATTTCTTGTTCTCTGTATTTTTTTTCCTCACTGGTG
GTCCACAAAGCTTCAGGAATTCTCCTATTTATGCCTTCTCATTATGACAG
CATTATTGGGATAGAGACATACAATACCATATCTAAGGTCATGTAGATTA
GAAACATTCAAACTGAGCTGCTTATAATGCCATTGAAAACATTTTATGCA
CTGAGCCATCTCTGATGGCTAGATATAACTCATTAAATATAGCAAATATA
TGTTAAACATGCACGATATACTTCATTCTATGAGGCTTGCCACGCAGTTC
TGAAATTATTACCTTATTCTGTGCCTTAATGGAACTGATTCATATACTGA
TGAATATACTACT
TTCCCCCTCCTTCCTTNTCTNNNTCTTTTTTTTTCTTCTCCTTTTNNNNN
NNNCTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTGTGCATATTTAT
GACCTAGGCTCTTCATACATATTATGTTTGCCTAGCTTAATGTTCTTATT
GATCTTCTAACCGTGGGAGCAGGATTGTTTCTGACTTTTTTGTTTGCTTT
GTTGACCCTTTTTCTCCTATTGGGTTGTTTTCTCCAGCCTTAATATGAGG
GGAGGTTTCTAGTGTTATTGGAGCGTGATATGTCTTGATTAGTTGATATC
CCTGGGAGTCCTGCCCTTTTCAGAAGTGAAATGAAGGAGTGGATCTGGGC
TGAAAACTAGGATGAGCCTGTTATGCACCCACCACCGGCGAAACTGTGGT
TAGGATGGAATGTATGATAGAAGAATAAAAGTTATTTTATTCTTTTTTTT
TTTCTGGAGTCTTCCACTGCAATTAGGCTTCACCAATAGCTTCAGAAAGG
CTCTCTTCATGGTGTCAAGCCTCAACTCCTTTGCATGACCCCATTTGTCC
TGGGTGAGGTTGTACCTTCACCAATGGTCTATCCTGTCCTCTCAAAACCT
ACACTCACAGTGACACACTTCCCCCAATAAAGTCACACCCACTCCAACAA
GGCCACACCTCCTAATAATGCCACTTACTCCCTGGGACAAGCATATTCAA
ACCACTACAGTACTAATTCCTAGGGATTTCTTCGAAAGCTTAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_i01.b1 MSMg01no237_i01.b1 CHROMAT_FILE:
MSMg01no237_i01.b1 PHD_FILE: MSMg01no237_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:21 2005
         (194 letters)



>mm_chr5_87828359_87828952
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatctgtgtatctctactcagtaagggcaggaaaatttgcacataaaatttaattgagca 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatctgtgtatttctactcagtaagggcaggaaaatttgcacataaaatttaattgagca 260

                                                                       
Query: 61  ttctcgtttttgtaattatcactgagattggttacttcctccatttcttaactttttgtc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttctcgtttttgtaattatcactgagatttgttacttcctccatttcttaactttttgtc 320

                                                                       
Query: 121 tgcctcactccctctgtgttctgttgaagcatagatgacacatttgatgtgtgcaaatgt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgcctcactccctctgtgttctgttgaagcatagatgagacatttgatgtgtgcaaatgt 380

                         
Query: 181 atgtttatgtgtac 194
           ||||||||||||||
Sbjct: 381 atgtttatgtgtac 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)