Query= MSMg01no237_k04.b1 MSMg01no237_k04.b1 CHROMAT_FILE:
MSMg01no237_k04.b1 PHD_FILE: MSMg01no237_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:30 2005
(687 letters)
>mm_chr5_87153524_87154612
Length = 1089
Score = 600 bits (310), Expect = e-175
Identities = 338/352 (96%), Gaps = 9/352 (2%)
Strand = Plus / Plus
Query: 4 ggaattcagaaaatagcaatttagagagctagaattgccacctggaataaccttccaaag 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaaaatagaaatttagagagctagaattgccacctggaataaccttccaaag 263
Query: 64 acaataagtatgttcactgagctcctttgtcacagaccttatttttgcccactgggctta 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaataagtatgttcactaagctcctttgtcacagaccttatttttgcccactgggctta 323
Query: 124 ggggatgtcttgtctgcttcttatccactgtgccctgtttctgctgccaattcacacaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggggatgtcttgtctgcttcttatccactgtgccctgtttctgctgccaattcacacaac 383
Query: 184 ctgctttgttgacctactgtagagttaatgtagtatagtttccccattttgcatacaaaa 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 ctgctttgttgacctactgtagagttaatgtagtatagttttcccattttgcatacaaaa 443
Query: 244 gagtcaga--cttgtgtctaccttcagtggatagtaatgcctaccacatttctgtgatag 301
|||||||| |||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 444 gagtcagagacttgtgtctaccttcagt-------aatgcctattacatttctgtgatag 496
Query: 302 acattgtgccaatccttataaatataataataacctaagaccattgaaaaat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acattgtgccaatccttataaatataataataacctaagaccattgaaaaat 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1089
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1079
Effective search space: 730483
Effective search space used: 730483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_k04.g1 MSMg01no237_k04.g1 CHROMAT_FILE:
MSMg01no237_k04.g1 PHD_FILE: MSMg01no237_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:30 2005
(660 letters)
>mm_chr5_87288422_87289481
Length = 1060
Score = 1261 bits (652), Expect = 0.0
Identities = 658/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 1 tcacaattttcatgttttactgtgcttttaatgcaacagctaatgacccttgtaatggat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1002 tcacaattttcatgttttactgtgcttttaatgcaacagctaatgaaccttgtaatggat 943
Query: 61 tagtaccctcagaagctttactggaaatctatctatgggaatattgagacatgagatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tagtaccctcagaagctttactggaaatctatctatgggaatattgagacatgagatcaa 883
Query: 121 atatttaacaatcctcctataaagttatgttagcttcccttgaactttggcaacaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 atatttaacaatcctcctataaagttatgttagcttcccttgaactttggcaacaaaaga 823
Query: 181 ctacagtatgaatgatataccttaatgtctacactttagggataaaaggcaaagcagttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctacagtatgaatgatataccttaatgtctacactttagggataaaaggcaaagcagttt 763
Query: 241 ctttgctcatgtatgttctagcctatgagtaagttggggtcatgacagttggattcagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ctttgctcatgtatgttctagcctatgagtaagttggggtcatgacagttggattcagta 703
Query: 301 ttctcagcttgctgggcttcctcattgctttcctgttcaaaaatcttttcttctggtagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttctcagcttgctgggcttcctcattgctttcctgttcaaaaatcttttcttctggtagc 643
Query: 361 atcattcttaagtgtgactaaactgtgactatatagtcatagggtacagacataatgcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atcattcttaagtgtgactaaactgtgactatatagtcatagggtacagacataatgcat 583
Query: 421 tgattgggttcttgcatattgaatttttagggaatttggggacacatagtgaatgaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgattgggttcttgcatattgaatttttagggaatttggggacacatagtgaatgaaact 523
Query: 481 ttgtttaaaaaaaaaaagaaaaaatattaaatcagttactaggaacggggagaagcccaa 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttgtttaaaaaaaaaa-gaaaaaatattaaatcagttactaggaacggggagaagcccaa 464
Query: 541 taagatacagagacatagattacttatcaaattttagtcacaaatcataaataaatatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taagatacagagacatagattacttatcaaattttagtcacaaatcataaataaatatgg 404
Query: 601 acatctaaaatatagcatgtgactaaagctaataatgctgaagagatttttgtaaaatag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acatctaaaatatagcatgtgactaaagctaataatgctgaagagatttttgtaaaatag 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
