Query= MSMg01no237_l23.b1 MSMg01no237_l23.b1 CHROMAT_FILE:
MSMg01no237_l23.b1 PHD_FILE: MSMg01no237_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:39 2005
(577 letters)
>mm_chr5_52045464_52046440
Length = 977
Score = 1029 bits (532), Expect = 0.0
Identities = 571/596 (95%), Gaps = 20/596 (3%)
Strand = Plus / Minus
Query: 1 gataccaggaggtacttcacagcatatatgtggcaccaagcactacttgaagaacagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gataccaggaggtacttcacagcatatatgtggcaccaagcactacttgaagaacagaac 862
Query: 61 actaacaggacagaactgactgtgactgaactgcttcacctttagaatgtctaaatagtt 120
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 861 actaacaggacagaacttactgtggctgaactgcttcacctttagaatgtctaaatagtt 802
Query: 121 ttccaaacatctgattctcttttactttaatccttgtagtaggtattcatgcaataaata 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttccaaacttctgattctcttttactttaatccttgtagtaggtattcatgcaataaata 742
Query: 181 tatacattcatgtaatagtcaagaatatatatatat------------------atacat 222
||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 741 tatacattcatgtaagagtcaagaatatatatatatatatatatatacacacacatacat 682
Query: 223 ta--atatatgtgtgtgtgtataatacaacatatgtattgatgcaagtacaaatcttgaa 280
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 taatatatatgtgtgtgtgtataatagaacatatgtattgatgcaagtacaaatcttgaa 622
Query: 281 ttgttttgtgtacatacaatactatttctggtattctttcatttctatctatatagaaat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgttttgtgtacatacaatactatttctggtattctttcatttctatctatatagaaat 562
Query: 341 gaagttagtgataattgtatgagtacattatttaaagagaccaataaaataatatgactt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagttagtgataattgtatgagtacattatttaaagagaccaataaaataatatgactt 502
Query: 401 gccttttgctttttaaggtgatgataaatttactagctgtctgttttaaataattaaatt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccttttgctttttaaggtgatgataaatttactagctgtctgttttaaataattaaatt 442
Query: 461 attttcttttaagtcggttttaatgctattgaggaatagccttagagtaatggtcttaat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttcttttaagtcggttttaatgctattgaggaatagccttagagtaatggtcttaat 382
Query: 521 ttatcagtgagttcatactgtaggaacccagaaatcagagcccaggccctcttact 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcagtgagttcatactgtaggaacccagaaatcagagcccaggccctcttact 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_l23.g1 MSMg01no237_l23.g1 CHROMAT_FILE:
MSMg01no237_l23.g1 PHD_FILE: MSMg01no237_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:39 2005
(624 letters)
>mm_chr5_51895923_51896946
Length = 1024
Score = 1168 bits (604), Expect = 0.0
Identities = 619/624 (99%)
Strand = Plus / Plus
Query: 1 attactctgaagcccttgtaggaaccaaagtgtaaacacagaagttcaatagaatggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactctgaagcccttgtaggaaccaaagtgtaaacacagaagttcaatagaatggttg 260
Query: 61 gtgtgggcaaaatgagctatttcagatgagaaacagaaaggcgatgtttcatatctgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgggcaaaatgagctatttcagatgagaaacagaaaggcgatgtttcatatctgttt 320
Query: 121 ctcacagtaggaggaagaaggaacagagtggtggcaggacgctcaataaactcgacaaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ctcacagtaggaggaagaaggaacagagtggtggcaggacgctcaataaattcgacaaga 380
Query: 181 gccagcaaggcattccttttgaccttgggtgtaaatgaagagaaacatggttgcaaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagcaaggcattccttttgaccttgggtgtaaatgaagagaaacatggttgcaaaaag 440
Query: 241 ttcaatgacaccagatagcagactaagagaacagatgctcccattctcagcgcgagcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaatgacaccagatagcagactaagagaacagatgctcccattctcagcgcgagcagc 500
Query: 301 tgcacaggcgccagtgaagatactcaaatctgcatgcatggcacgatcaagaatgaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcacaggcgccagtgaagatactcaaatctgcatgcatggcacgatcaagaatgaccat 560
Query: 361 cttccattgtcaacacagaaaactaagtagccatgataaaaattggtcaagtctcattcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 cttccattgtcaacacagaaaactaagtagccatgataaaaattggtcaagtctcatccc 620
Query: 421 tttccttgccagatcctacccaggccccttcagatttccaaaaataaaaccccaaatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttccttgccagatcctacccaggccccttcagatttccaaaaataaaaccccaaatcca 680
Query: 481 aagggtttacatagtagctaggtgttcaccaaatgaattattacccaatggtgaccagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagggtttacatagtagctaggtgttcaccaaatgaattattacccaatggtgaccagcc 740
Query: 541 tcacagggtttgcccacaccatcatagtttaaatggggcatgtggttatccctttctaaa 600
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 741 tcacagggtttgcccacaccatcacactttaaatggggcatgtggttatccctttctaaa 800
Query: 601 ggcagcatcatttcagtatcaatg 624
|||||||||||||||| |||||||
Sbjct: 801 ggcagcatcatttcagcatcaatg 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
