BAC Information

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BAC

Clone NameMSMg01-237M08
Chromosome5 (Build37)
Map Location 76,139,714 - 76,140,052
singlet/doubletsinglet
Overlap genenone
Upstream geneEG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit
Downstream geneEG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237M08.T7 (MSMg01no237_m08.b1)MSMg01-237M08.TJ (MSMg01no237_m08.g1)
ACCAG402624AG402625
length728719
length of high quality
(start - end)
285 (371 - 655)339 (364 - 702)
definitionCHROMAT_FILE: MSMg01no237_m08.b1 PHD_FILE: MSMg01no237_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:40 2005CHROMAT_FILE: MSMg01no237_m08.g1 PHD_FILE: MSMg01no237_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTG
GCATTGGATATGGATCGCACATGCGGGGTTTTACTGGTCTACAGAATCAT
TTGTGTGAGGTCCCTGCTCCGTTTGATAGCTTGTTCTGATTCAGGGTAGT
CTTCATTGTTGGGACCTACTGGTTGGGTTGAGACTTGCAGGGCCTGTGTT
TGACTAGACCTCTGTTCTTGGCTTTCTATAGCTGTGATATGCACCATGAC
CGAAGCAACTTGGGGAGGAAAGGGTTTATTTATCTCACTCTACAGGTTAA
CAGTTTATCATCTATGGAAGTCAAGGCAGGAACCTGGAGACAGGACCTAT
TTTTTTTCTGCCCCCCCCCCCTGCTACCTGGCTTTCTCCCGCCTGGCTTC
CTGGCCTGCTTTCTTACACAGCTAAATGGCACCACTCATAGTGGCCGGGG
GCCCTCCTACAGCAAACAGTAAGTAGAAAAAAAGCATTACAGACATAGCC
GCAGGCCAGTTGGATCAAGACAATTCCTCTGTCTAGGTTTCCTCTCCCCA
GGTCCCCTAGGTTGGGTCAAGTTGATAATAAACACTTGTCAGTATAACCG
TATTTAATTAAATTAACTATCACTTGACTGAGAAAGAGTAAACCCATTTT
GAAAAACATCAGGTAGCCTCTGATCTCTATTGTTCCCTGACCCGTTTGGT
AACTTTTTGGCAGCCATTTTTATTTCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACAGCCTCCGAAAGCTGCAGGCCAGATGTTGCACACCATGGG
TTGGCCCCTGAGGTCCCGGGAGCTGAGGGATACAGCACGAGCTTGAGAAG
ATTGACATTCTGTTCCCAGGAGCCCAAGGCTCTTGGGCCCCCTGTGTTAC
CTGGAAAATTTTTACAGTCTGAGCTGTGCCATCCATCAGAGATGGCCCCA
GCTTGGTCATTTTTCTCTCAGTCTTTGCAGTACTGTAGACTAGAATATAA
TGAACATATGGTCAGAATTTAAAGAGTTAATGATTTCAGACCTGATTATA
ACCAGGTCTCCCTCTTCCACTCAGGGGAAGGGTGCTGGGGTAAGAGGGCG
ATAGAGCCGGTCCTAATGATGCTCCCCTAAGAATCTATAAAGGCACAGAT
GCATTCTGGGCCACCAGCAGGGACAGAAACCCTTAACCTATTTTTCTAGA
GAACTAACGATAGGCTCAGGGATCCACACGAGGCTTCAGTTGCCAGCTCA
GTTCCAACTACAGTATGCGAGAGTCAGGCAGAGTCTGCAAACTGCCCGCC
CTGGACTGATGCTCACTTCCTGAGTACACAAACGCACGTTGGTAGATGCT
GGGGTCATTCAGAATCCATCAGCTGATTGAGAAAAGTCGTAGGTGAGTCC
TGCCTGTGAGCATACTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_m08.g1 MSMg01no237_m08.g1 CHROMAT_FILE:
MSMg01no237_m08.g1 PHD_FILE: MSMg01no237_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:40 2005
         (339 letters)



>mm_chr5_76139514_76140252
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccactcaggggaagggtgctggggtaagagggcgatagagccggtcctaatgatgct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 539 cttccactcaggggaagggtgctggggtaagagggcgatagagccggtcctaatgatgtt 480

                                                                       
Query: 61  cccctaagaatctataaaggcacagatgcattctgggccaccagcagggacagaaaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cccctaagaatctataaaggcacagatgcattctgggccaccagcagggacagaaaccct 420

                                                                       
Query: 121 taacctatttttctagagaactaacgataggctcagggatccacacgaggcttcagttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taacctatttttctagagaactaacgataggctcagggatccacacgaggcttcagttgc 360

                                                                       
Query: 181 cagctcagttccaactacagtatgcgagagtcaggcagagtctgcaaactgcccgccctg 240
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 359 cagctcagttccaactacagtattcgagagtcaggcagagtctgcaaactgcccgcccgg 300

                                                                       
Query: 241 gactgatgctcacttcctgagtacacaaacgcacgttggtagatgctggggtcattcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gactgatgctcacttcctgagtacacaaacgcacgttggtagatgctggggtcattcaga 240

                                                  
Query: 301 atccatcagctgattgagaaaagtcgtaggtgagtcctg 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atccatcagctgattgagaaaagtcgtaggtgagtcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)