BAC Information

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BAC

Clone NameMSMg01-237O22
Chromosome5 (Build37)
Map Location 64,120,925 - 64,121,156
singlet/doubletsinglet
Overlap gene3110047P20Rik
Upstream geneCentd1, LOC100042133
Downstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237O22.T7 (MSMg01no237_o22.b1)MSMg01-237O22.TJ (MSMg01no237_o22.g1)
ACCAG402738AG402739
length757758
length of high quality
(start - end)
232 (132 - 363)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no237_o22.b1 PHD_FILE: MSMg01no237_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:52 2005CHROMAT_FILE: MSMg01no237_o22.g1 PHD_FILE: MSMg01no237_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCATATGATTATTGTGCAAAGGGTTTTTAGAAGATTGCAGGGGA
GCATATGTGTCCTGTCAGTTTACCCATGTGTCCTGTCAGGGTCTGGTGAT
CAGAGAAGTTTTTCTTAAGGTGGTTAGTTTACATCATCTCTTCTTCCATT
CACTTTTTTTGCTGCAAGTTCCTACTAATTCTTACTGATAACAGGCACTG
TCCTAGGATGAGGATTTAGCTGCCAGGAGGAAAGGTTAGGGCTTCATACT
GTGAAATTTAGATTCTAGTGGGAAAAGAGATAAGAAAGGCAATCTATAAG
AAAATAAGAGAAATANCTTACTGCCGNNACCCANCACTCAAATTGCTAAA
ATAATGAGACATTTCCCTGACGAAGAAGAAGAAAAAAAACTCATGGCAAG
GAACACAGCTAGGGCAAACTTAAAGGGGTGGGGTTCAAGGTTTAAGAGCT
GAAAGTGACACATATAGTCACAGCCAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAT
AGAACNCTTACACTTCCCTCTTCTATCCATATTATACATATTTTCTTTTA
CGTCTTGTTTCCTAACATAGTTATGTCGTGTTTGAATTTTCACCTTTTTA
CTTATTTATCCTTCACCTTTCTTTCTTATATACTACAGAGCTTATAATAA
TGGTTAC
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGACTGAATCAGCAAGCACA
GGGCCTGTAGGGGTCTGATTCAGGTCCTATGAGTATATAGTGTAGCTTTT
TGTCTAGTGTTTTATGGGACTCCTGAGGGTGTGAACTAGTGGGTCTCTGA
ATTCTTGTACCTTCTCTGGCCCTTTTCCTTCTGTTGGTTTGCCGTATCCT
ACTTCAGTGTGATGCTTTTTACTTTATCTTATTGCATTGTATTTTATTAG
GTTTTGTTGTTATCTCTTAGAAGCCTGTTGTTTTCTAATGAGAGACAAAG
GGGGCATGGATCTGATTTGTTTTTCCCCCCCCCCCCCACACTGAGAAGAG
TAGAGGGAGGGGAAACAATACTCAGGATAGATTGTAAGAGAAAAGAATCT
CTTTTCAGTAAATGGTTTTTTAAAAAATGGGAAATAAAAGTTAGGAACTA
ACATTTGCAGAAGGCATACTGGGGAGTTGAAATGGAGAGAGGTCAATTAA
GAGGGTCTTGAAAGCACCTAGAAAAGAAAAGGCAAGTAAGAGAACCTGGA
AGAAACTGTTGTTGCTGTTCCCAGCCCCCTACATTGTTCACATTTAGAAT
CTCAACAATACGTACACTCCAGTGTCCAAGACTTCCAAAGCCTGGGCTCT
AAGCCAGGAAGTATTTCCTAGCTGCTGAGCACAAAGCTGTGAGCCTTCTT
CATAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_o22.b1 MSMg01no237_o22.b1 CHROMAT_FILE:
MSMg01no237_o22.b1 PHD_FILE: MSMg01no237_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:52 2005
         (232 letters)



>mm_chr5_64120725_64121356
          Length = 632

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtcagggtctggtgatcagagaagtttttcttaaggtggttagtttacatcatctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 432 cctgtcagggtctggtgatcagagaagtttttcttaaggtggttagtttatatcatctct 373

                                                                       
Query: 61  tcttccattcactttttttgctgcaagttcctactaattcttactgataacaggcactgt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 372 tcttccattcactttttttgctgcaagttcctactaagtcttactgataacaggcactgt 313

                                                                       
Query: 121 cctaggatgaggatttagctgccaggaggaaaggttagggcttcatactgtgaaatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cctaggatgaggatttagctgccaggaggaaaggttagggcttcatactgtgaaatttag 253

                                                               
Query: 181 attctagtgggaaaagagataagaaaggcaatctataagaaaataagagaaa 232
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 252 attctagtgggaaaagagataagaaaggcaatctataagaaaacaagagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)