BAC Information

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BAC

Clone NameMSMg01-237P01
Chromosome5 (Build37)
Map Location 28,398,978 - 28,399,371
singlet/doubletsinglet
Overlap geneInsig1
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069
Downstream geneEn2, Cnpy1, Prr8, Shh, LOC100039258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237P01.T7 (MSMg01no237_p01.b1)MSMg01-237P01.TJ (MSMg01no237_p01.g1)
ACCAG402744AG402745
length716709
length of high quality
(start - end)
465 (64 - 528)394 (59 - 452)
definitionCHROMAT_FILE: MSMg01no237_p01.b1 PHD_FILE: MSMg01no237_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:53 2005CHROMAT_FILE: MSMg01no237_p01.g1 PHD_FILE: MSMg01no237_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTT
TGTTTACTTACAGTGCAAGTCGCTGTCATAGCAACCATCCAAAGATTCTT
TGAATGAATCCCACATATTTATAATCATTGTCATTCTGTAAGTTCTGGCC
ATCCCAGAGTAGGTGTACTGTGTTTATGCTTGATGAAAATTTTCAGTTGA
TGTTAAATTTTTGAGTAGTTTCACTGTCTAAATCCAGATAGGCAGTTGTT
TTCTTTTAGCACATAAAAGAATGTCATTCTGTTTCCTGGTGCCCAGTATT
TCTAATAGCACACTATTTCTTTGCCTCCTGCTTACTTGGATATGATAACT
CTTTTATTTGGCGCAGGCTTTAGAACTCCTTTCCATACTTGGCATTTTTG
AATGTACTTACCTCACCTATTTTTGGGGGCTTCTGCAGTCGTAGCACTGA
CATATCAATGCTTCTCAGTTCTCACAACTTTCTAGTTATTAAGTCAAAGA
ACAGACTGCTTCCAAGTCATTTTAAGGCATGAGAACATATGTGAGTTGGT
AAAGTACTTGATTGCTTTGCAAGCATGAGGACCTGACTTTGCTCCCTACA
GTTATGTAAGAGATCTGTGTTCCAAGGTACACACTTGTAATCCTCAGCAC
CAGGTTAGAGGGTAAAGACAGGTATTCTTGGTGCTCACTGCCCAGCCAAT
TTAAACTTCCTTGAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAATCTCCATCTTATTCCCCAAGGAACTATTAAATGCTGGGG
ACAGTAGTTTGGTGGCAGATGATTTGCCTAGCATGAATGAGGCCACCCCC
AGTCCAAAACAACCAAGAAGCACACAACTGTCATGTGGCTGACCCTCATA
ATGCTGCAGGTGAGCCTGAGAGCAAGCAGCCTTGGAAATCAACAGTTAAG
TGTCCTGCATCCTACATTTAACCCATGACTCAGCTACAGCACAGCACCCA
AGCCCAGCATATAAAGCATAGGCAGGCAGTCAATAAAAGCTGGCTTCAAA
GCAGACAGGCACTGCTCCTGCTGTCCTGTGGCTGCAGATTGGAGGAAAGA
TGCACCTGAGCAAATACTGCCCACCTACACAGGACAGGACAAGGACAAGC
AGGGCTGAGGGGGGAGAAACACTTGACAAATGGTTATCAACGCTGTACAC
TGTAAAGTATGCAGGATCTGTTGGACTGTAATTACTCAACACTTTTGGCA
AAAAGCAGCAAAATGATCAAGGAAAGAAAAAAGACTGTGGCACTGTTACC
AGTTTCGTTGGGCCTAATAGGTGACCCCATATGTGTGCTTAGGCCCAAAG
GCTCCTTTTTTTCCTCCTGTCCCAAGTCTACTGGGCACGGAGTTCCAGAA
AGTTTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_p01.g1 MSMg01no237_p01.g1 CHROMAT_FILE:
MSMg01no237_p01.g1 PHD_FILE: MSMg01no237_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:53 2005
         (394 letters)



>mm_chr5_28398778_28399571
          Length = 794

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatctccatcttattccccaaggaactattaaatgctggggacagtagtttggtggcag 60
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 594 aaatctccatcttattccccaaggaacttttaaatgctggggatagtagtttggtggcag 535

                                                                       
Query: 61  atgatttgcctagcatgaatgaggccacccccagtccaaaacaaccaagaagcacacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atgatttgcctagcatgaatgaggccacccccagtccaaaacaaccaagaagcacacaac 475

                                                                       
Query: 121 tgtcatgtggctgaccctcataatgctgcaggtgagcctgagagcaagcagccttggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtcatgtggctgaccctcataatgctgcaggtgagcctgagagcaagcagccttggaaa 415

                                                                       
Query: 181 tcaacagttaagtgtcctgcatcctacatttaacccatgactcagctacagcacagcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcaacagttaagtgtcctgcatcctacatttaacccatgactcagctacagcacagcacc 355

                                                                       
Query: 241 caagcccagcatataaagcataggcaggcagtcaataaaagctggcttcaaagcagacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caagcccagcatataaagcataggcaggcagtcaataaaagctggcttcaaagcagacag 295

                                                                       
Query: 301 gcactgctcctgctgtcctgtggctgcagattggaggaaagatgcacctgagcaaatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gcactgctcctgctgtcctgtggctgcagattggaggaaagatgcacctgagcaaatact 235

                                             
Query: 361 gcccacctacacaggacaggacaaggacaagcag 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gcccacctacacaggacaggacaaggacaagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)