BAC Information

Click to search

BAC

Clone NameMSMg01-260L03
Chromosome5 (Build37)
Map Location 103,981,752 - 103,982,092
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260L03.T7 (MSMg01no260_l03.b1)MSMg01-260L03.TJ (MSMg01no260_l03.g1)
ACCAG403288AG403289
length740743
length of high quality
(start - end)
349 (75 - 423)344 (79 - 422)
definitionCHROMAT_FILE: MSMg01no260_l03.b1 PHD_FILE: MSMg01no260_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:52 2005CHROMAT_FILE: MSMg01no260_l03.g1 PHD_FILE: MSMg01no260_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCC
GCGGAATTCTCACCTGATTGATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATTATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGAAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTACACACANCCAAAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACAC
AATGGAATACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACT
CACGAAGAATGAAGAATGAAGACTGAAGTGTGGACACTAT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCAAACACGGGCTACAAAG
GAGACTGTCTTTAGAAACTATCCCCCACATAAATAATTGGGTGGTTGTAC
TACTGTACCACAGATATAACTGGGTGGGGGTACAGCAGCACCAAGCAGAC
CAAGACAAACCCCTCCTTCTTTAGTAATGTAATTGAGAGGGGAGCCTGGA
GTACACGCTGGTAAAACTTCTGGCTTGTTTGTGTTTTGTCTTTTGTTAAA
GTAGCAGGATAGAATAGATATACATCATGATAAAATGAATCTAGCTTCCT
GAAGAACAATATTACGTAACCCCATTTCAGTTTTGGAAAACAAACCAGAC
CAAGACATCCTTCTTTGGTTGGCCAGCACTTAAGGTGACATTCCGCATCG
TGAGCTGTTTTATCACCCTGACCTCTCATAGCACAGGTATAAGCAGGCAT
TTTCTCACTGGGTGTTTAATACTTGTCTCCTCTGATAAAAGCTTACTTTC
CATGAAGCCACGGGCTCTGGATTTTGCACGTTCTACACATGCCATAAATA
TCTGAATCATGGATCCATTTTCCATAGAACATCCATTAAAAGAAAATTAT
AATCCTGCTAAGGAAAATATGAATTTACTCCGAATTCACCTTTTCCTCTT
TCCTTTTTCAGCCTTTGAGATTCATGAGCCTTTTCCAAGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_l03.g1 MSMg01no260_l03.g1 CHROMAT_FILE:
MSMg01no260_l03.g1 PHD_FILE: MSMg01no260_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:52 2005
         (344 letters)



>mm_chr5_103981552_103982295
          Length = 744

 Score =  636 bits (329), Expect = 0.0
 Identities = 338/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcaaacacgggctacaaaggagactgtctttagaaactatcccccacataaataatt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 541 taggcaaacacgggctacaaaggagactgtctttagaaaatatcccccacataaataatt 482

                                                                       
Query: 61  gggtggttgtactactgtaccacagatataactgggtgggggtacagcagcaccaagcag 120
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 481 gggtggttgtattactgtaccacagatataactgggtgggggtacagcagcaccaagcgg 422

                                                                       
Query: 121 accaagacaaacccctccttctttagtaatgtaattgagaggggagcctggagtacacgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 accaagacaaacccctccttctttagtaatgtaattgagaggggagcctggagtacacgc 362

                                                                       
Query: 181 tggtaaaacttctggcttgtttgtgttttgtcttttgttaaagtagcaggatagaataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtaaaacttctggcttgtttgtgttttgtcttttgttaaagtagcaggatagaataga 302

                                                                       
Query: 241 tatacatcatgataaaatgaatctagcttcctgaagaacaatattacgtaaccccatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatacatcatgataaaatgaatctagcttcctgaagaacaatattacgtaaccccatttc 242

                                                    
Query: 301 agttttggaaaacaaaccagaccaagacatccttctttggt 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agttttggaaaacaaaccagaccaagacatccttctttggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)