Query= MSMg01no260_l10.b1 MSMg01no260_l10.b1 CHROMAT_FILE:
MSMg01no260_l10.b1 PHD_FILE: MSMg01no260_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:53 2005
(466 letters)
>mm_chr5_118496080_118496945
Length = 866
Score = 783 bits (405), Expect = 0.0
Identities = 447/461 (96%)
Strand = Plus / Plus
Query: 6 gaattccttctttctttcatttcccctgccccttcttagtctcctcagaccagatagagc 65
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 206 gaattccttctttcttccatttcccctgccccttcttagtctcctcggaccagatagagc 265
Query: 66 agctgcatcggaggttcaagcagctaagcggggaccagcctaccattcggtaagacgcgc 125
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 266 agctgcatcggaggttcaagcagctaagcggggaccagcccaccattcggtaagacgtgc 325
Query: 126 agccagctttgggcttcgagttactttcttctgtctgttatcgcttaccctgggatcttg 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 agccagctttgggcttcgagttactttcttctgtctgttatcgcttaccctgggttcttg 385
Query: 186 tggctctgggttggctccaaggcgtgtcccagtttctaaagcaaacctgttgtttgaatt 245
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggctctgggctggctccaaggcgtgtcccagtttctaaagcaaacctgttgtttgaatt 445
Query: 246 ctcctgggttgctgtaagacaagatgtggagggaagaatggcaatatctggttctacagg 305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 446 ctcctgggttgctgtaagacaagatgtggagggaagaagggcaatatctggttctacagg 505
Query: 306 aacaggcactcgcaggggaaaccacccaggcctgctcaacctttatgtcttgtgtgatct 365
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 506 aacaggcactcgcaggggaagccacccaggcctgctcaacctttatgtcgtgtgtgatct 565
Query: 366 ggacttgccccgaagttcccccgatgctgagcgcctgctggagcctccctgatgctggga 425
||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 566 ggacttgtactgaagttcccccgatgctgagcgcctgctggagcctccctgatgatggga 625
Query: 426 gtctgaggctctactgatagagctggcattgccctgatggg 466
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 626 gtctgagggtctactgatagagctggcattgccctgatggg 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_l10.g1 MSMg01no260_l10.g1 CHROMAT_FILE:
MSMg01no260_l10.g1 PHD_FILE: MSMg01no260_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:53 2005
(406 letters)
>mm_chr5_118647423_118648228
Length = 806
Score = 704 bits (364), Expect = 0.0
Identities = 390/406 (96%), Gaps = 12/406 (2%)
Strand = Plus / Minus
Query: 1 ctacttggtagaattcctgggtgaggggtcgctcgtttttgacgggtcttactaaattgc 60
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 430 ctacttggtagaattcctgggtgaggggtcgctcgt------------ttactaaattgc 383
Query: 61 cctctttggagagactacctgcctgttccccataccaagtgtgccccagccgcttgcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctctttggagagactacctgcctgttccccataccaagtgtgccccagccgcttgcccc 323
Query: 121 accctcccttgcacgcagcattcccgaagccctcggctttgccagactgacaggtgacag 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 accctcccttgcacgcagcattcccgaagccctgggctttgccagactgacaggtgacag 263
Query: 181 tgctgtcgagctccgctttcatttgcatctccctaattatgagcgtggctgggcagctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgctgtcgagctccgctttcatttgcatctccctaattatgagcgtggctgggcagctct 203
Query: 241 gcatgtgctttggagccatctgtatttccttccccgtgacggggatcatctgaacatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcatgtgctttggagccatctgtatttccttccccgtgacggggatcatctgaacatgat 143
Query: 301 ggtgaggtggaattcgttctcctggcagtctcctccgggcctcaccccgcctgtctcttc 360
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 142 ggtgaggtggaattcgttctcctggcagtctcctccgggcctcaatctgcctgtctcttc 83
Query: 361 cattcttgcaccacgtcttcccaaaggtggaggagggacacttggg 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cattcttgcaccacgtcttcccaaaggtggaggagggacacttggg 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
