Query= MSMg01no260_p04.b1 MSMg01no260_p04.b1 CHROMAT_FILE:
MSMg01no260_p04.b1 PHD_FILE: MSMg01no260_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:12 2005
(278 letters)
>mm_chr5_89821980_89822654
Length = 675
Score = 456 bits (236), Expect = e-133
Identities = 264/274 (96%), Gaps = 3/274 (1%)
Strand = Plus / Minus
Query: 5 ggaattctgaatgtttgcggaaaaactctgagaaaaccaggcaagagtcttgggacctca 64
||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 475 ggaattctgaatgcttgtgggaaaactctgagaaaacctggcaagagtcttgggacctca 416
Query: 65 gtctcttcaaagctcagaattgttcctagaatatgtcttcatgcccctcccaggtacagt 124
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 415 gtctcttcaaagctcggaattgttcctagaatatgtcttcatgtccctcccaggtacagt 356
Query: 125 gtataagagtgagtttagattattcattataactggctcttgctatttatttgcttctat 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 355 gtataagagtgagtttagattattcattataactggctcttgctgtttatttgcttctat 296
Query: 185 ggggaaacatgtgtttattgtgtgcagcttttccttgtgattatatattcaggtgatctt 244
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggg-aaac--gtgtttattgtgtgcagcttttccttgtgattatatattcaggtgatctt 239
Query: 245 tcttaaccctcatggtataaattgtctgaagctg 278
||||||||||||||||||||||||||||||||||
Sbjct: 238 tcttaaccctcatggtataaattgtctgaagctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 675
Length adjustment: 9
Effective length of query: 269
Effective length of database: 666
Effective search space: 179154
Effective search space used: 179154
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no260_p04.g1 MSMg01no260_p04.g1 CHROMAT_FILE:
MSMg01no260_p04.g1 PHD_FILE: MSMg01no260_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:13 2005
(557 letters)
>mm_chr5_89655211_89656167
Length = 957
Score = 998 bits (516), Expect = 0.0
Identities = 545/558 (97%), Gaps = 9/558 (1%)
Strand = Plus / Plus
Query: 1 actagagatagagtttttgagatttgtttggtttacatcatttttaggatatggttggac 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 actagagatagagtttttgagatttgtttggtttacatcatttttacgatatggttggac 260
Query: 61 tagtcttcctgtatacttacaagatgaagcaaataattgtccccccttcccccc-ccacc 119
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 261 tagtcttcctgtatacttacaagatgaagcaaataattgtcccccc-tccccccaccacc 319
Query: 120 accccaaatcaaaatggaaagagaaaatgcaagctctatttcttgattcattattgattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 accccaaatcaaaatggaaagagaaaatgcaagctctatttcttgattcattattgattt 379
Query: 180 tttttttttactttactttactttactgtaattccatttcttgcaagaaactgcctacat 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttttt-----tttactttactttactgtaattccatttcttgcaagaaactgcctacat 434
Query: 240 gcactctttttgtgacaaaacttttcctggggagacttctacccccagatagaaaatcta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcactctttttgtgacaaaacttttcctggggagacttctacccccagatagaaaatcta 494
Query: 300 caacagaccaaaggacagataaaaccaaagtccaatttagtgaaccacttagttttattg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caacagaccaaaggacagataaaaccaaagtccaatttagtgaaccacttagttttattg 554
Query: 360 gggctactttcaggaatttgggtgagatgttacttagaaacagaaaatactcaaagacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gggctactttcaggaatttgggtgagatgttacttagaaacagaaaatactcaaagacag 614
Query: 420 cagcatgaccattaccagcatggatgacagctcacaaagctgggaatgtggagcacactg 479
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 615 cggcatgaccattaccagcatggctgacagctcacaaagctgggaatgtggagcacactg 674
Query: 480 cacagcctgcaggcagctcagcaggctgcagagtcttttccaggtgctcagctgctctga 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 675 cacagcctgcaggcagctcagcaggctgcag--tcttttccaggtgctcagctgctctga 732
Query: 540 gtctcttccaggcaggtg 557
|||||||||||||||||
Sbjct: 733 atctcttccaggcaggtg 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
